1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGTCAGGCTCCAGAGGGTAACCATAAACTGACAAAGGCAGAGGCAATGAATCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttgttttaaacaaactatgggggtgtttagatctaggggtgtaaaattttggtgtgtcacatcaagtattatatagggtgtcgcatggggtgt...
species | Oryza sativa |
transcript | LOC_Os06g02550.2 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|29638209|gb|CB643218.1|CB643218
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|58685705|gb|CK074392.1|CK074392
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|88908091|gb|CI090687.1|CI090687
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: GGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|88226381|gb|CI226297.1|CI226297
genomic: GGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: ACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|88833179|gb|CI076662.1|CI076662
genomic: ACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCAGTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|66916087|gb|CX102935.1|CX102935
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|218489541|gb|FG952487.1|FG952487
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: AGCCTTGGTCCAGACCGA-CACCAGCAGCTAGCAGCAGTAAGGAGCAATG GAAATTACTTCAGTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|86479184|gb|CI121817.1|CI121817
genomic: AGCCTTGGTCCAGACC-ACCACCAGCAGC-AGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: CAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|29641487|gb|CB646494.1|CB646494
genomic: CAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|218496116|gb|FG953480.1|FG953480
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: CCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|58593890|gb|CF992198.1|CF992198
genomic: CCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGTGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|29666198|gb|CB662473.1|CB662473
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCTCCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|29626826|gb|CB631837.1|CB631837
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|58684250|gb|CK072937.1|CK072937
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGTGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|29626870|gb|CB631881.1|CB631881
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGAEST: gi|58688578|gb|CK077265.1|CK077265
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
EST: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATG GAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
genomic: TCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttg ... ccttatgtagGAAATTACTTCACTAAAGACCAGGGCCCTCGTGCGCCTGACATTGCGGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCAGGCTCCAGAGGGTAACCATAAACTGACAAAGGCAGAGGCAATGAATCAGCCTTGGTCCAGACCACCACCAGCAGCAGCAGCAGTAAGGAGCAATGgtgagtgttgttttaaacaaactatgggggtgtttagatctaggggtgtaaaattttggtgtgtcacatcaagtattatatagggtgtcgcatggggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA