1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GCACAAGTAATTGAACGAGATGATGAGgtatgttaaaatgctgtttaggactttaggctgcatctgttatttgtattgtcatttgatctgcatgttcaatacttccattgttaaatggtttgtcctt...
species | Oryza sativa |
transcript | LOC_Os05g51490.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GCACAAGTAATTGAACGAGATGATGAG GATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATAEST: gi|58608385|gb|CK036418.1|CK036418
genomic: GCACAAGTAATTGAACGAGATGATGAGgtatgttaaa ... ttcctttcagGATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATA
EST: GCACAAGTAATTGAACGAGATGATGAG GATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATATCTTCGTTGCGTEST: gi|58653975|gb|CK042655.1|CK042655
genomic: GCACAAGTAATTGAACGAGATGATGAGgtatgttaaa ... ttcctttcagGATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATATCTTCGTTGCGT
EST: GCACAAGTAATTGAACGAGATGATGAG GATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATATCTTCGEST: gi|218484458|gb|FG943361.1|FG943361
genomic: GCACAAGTAATTGAACGAGATGATGAGgtatgttaaa ... ttcctttcagGATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATATCTTCG
EST: GCACAAGTAATTGAACGAGATGATGAG GATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATATCTTCGTTGCGTEST: gi|58660503|gb|CK049183.1|CK049183
genomic: GCACAAGTAATTGAACGAGATGATGAGgtatgttaaa ... ttcctttcagGATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATATCTTCGTTGCGT
EST: GCACAAGTAATTGAACGAGATGATGAG GATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATATCTTCGTTGCGT
genomic: GCACAAGTAATTGAACGAGATGATGAGgtatgttaaa ... ttcctttcagGATGTCTACTTTGATGATGAATCAGCTGAAGTAGTAATATCTTCGTTGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACAAGTAATTGAACGAGATGATGAGgtatgttaaaatgctgtttaggactttaggctgcatctgttatttgtattgtcatttgatctgcatgttcaatacttccattgttaaatggtttgtcctt
- - - - - - - - GAGATG