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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGGAGCAACAAGGCATAGCGGGCGTGAGCCATCACAGCCTTCTGTTTTCTAAGACAGCAATCTTACCTACACTGAATGATAATGATGGTTTGGACAGgttaattttactgtcttcaaagtgcagcatatgtttgttttgctttcagagaaatattgatctggcacgttgcaacacgtatccatttgttgctgttacctttggtgtctaacaggtgatgtatgctgtttctgtgtgcagcag

Basic information

species Oryza sativa
transcript LOC_Os04g59624.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g59624.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G138125_T02 (Zea mays), 5'ss of exon 17
TCCTGGAGCAACAAGGCATAGCGGGCGTGAGCCATCACAGCCTTCTGTTTTCTAAGACAGCAATCTTACCTACACTGAATGATAATGATGGTTTGGACAGgttaattttactgtcttcaa-agtgcagcatatgtttgttttgctttcagagaaatattgatctggcacgttgcaacacgtatccatttgttgctgttacctttggtgtctaacaggtgat-gtatgctgtttctgtgtgcagcag
| |||||||||||||| ||||| || ||||| ||||||||||| || || ||||| || |||| | | || || |||| ||| |||||||   ||||||||||| | |||| |  ||||| | |  ||| |||   |   ||  ||||     | |     | | |  |||  |  || ||  || |   ||||  | |  ||   || |  |    |||| |||| |||||| |   || ||   
TTCTGGAGCAACAAGGAATAGCCGGTGTGAGTCATCACAGCCTCCTATTCTCTAAAACTGCAACCCTGCCCACTCTGAGTGAGAATGATGCACTGGACAGgttagtgttacagctttcaatattatagc-tattcatagattcatttcttgttactgaaagttttgagcgtgtctcca-gttcccttaccttgcattgatgtt--atgacatatttatgattgtatactgtttttacatgtag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2799889|gb|AA752878.1|AA752878
EST:     TCTAAGACAGCAATCTTACCTACACTGAATGATAATGATGGTTTGGACAG                         TCGTCGAGCTATGCCAATGGCCAAGCACTACTACAAGGGAGCCTCATCTGA
genomic: TCTAAGACAGCAATCTTACCTACACTGAATGATAATGATGGTTTGGACAGgttaatttta ... tgtgcagcagTCGTCGAGCTATGCCAATGGCCAAGCACTACTACAAGGGAGCCTCATCTGA
EST: gi|86592938|gb|CI270495.1|CI270495
EST:     TCTAAGACAGCAATCTTACCTACACTGAATGATAATGATGGTTTGGACAG                         TCGTCGAGCTATGCCAATGGCCAAGCACTACTACAAGGGAGCCTCATCTGA
genomic: TCTAAGACAGCAATCTTACCTACACTGAATGATAATGATGGTTTGGACAGgttaatttta ... tgtgcagcagTCGTCGAGCTATGCCAATGGCCAAGCACTACTACAAGGGAGCCTCATCTGA
EST: gi|2800937|gb|AA754231.1|AA754231
EST:     TCTAAGACAGCAATCTTACCTACACTGAATGATAATGATGGTTTGGACAG                         TCGTCGAGCTATGCCAATGGCCAAGCACTACTACAAGGGAGCCTCATCTGA
genomic: TCTAAGACAGCAATCTTACCTACACTGAATGATAATGATGGTTTGGACAGgttaatttta ... tgtgcagcagTCGTCGAGCTATGCCAATGGCCAAGCACTACTACAAGGGAGCCTCATCTGA