1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
ACCATTGAAGCTCTCTCATGTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAGgtattgctgtaacaattgatttatgctttccataactctgcatatcatgtaactacctttcatattacag
species | Oryza sativa |
transcript | LOC_Os03g58700.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAG GCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAAEST: gi|13420911|gb|AU175001.1|AU175001
genomic: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAGgtattgctgt ... catattacagGCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAA
EST: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAG GCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAAEST: gi|58685652|gb|CK074339.1|CK074339
genomic: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAGgtattgctgt ... catattacagGCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAA
EST: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAG GCGGCCAATGATTGTGATCTGGAACCAGTTGCTTATGAGTTCTTTACTCAAEST: gi|29686657|gb|CB682932.1|CB682932
genomic: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAGgtattgctgt ... catattacagGCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAA
EST: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAG GCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAAEST: gi|2427663|gb|C72126.1|C72126
genomic: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAGgtattgctgt ... catattacagGCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAA
EST: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAG GCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAAEST: gi|29616228|gb|CB621240.1|CB621240
genomic: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAGgtattgctgt ... catattacagGCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAA
EST: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAG GCGGCCAATGATTGTGATCTGGAACCAGTTGCTTATGAGTTCTTTACTCAAEST: gi|58678521|gb|CK067208.1|CK067208
genomic: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAGgtattgctgt ... catattacagGCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAA
EST: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAG GCGGCCAATGATTGTGATCTGGAACCAGTTGCTTATGAGTTCTTTACTCAA
genomic: GTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAGgtattgctgt ... catattacagGCGGCCAATGATTGTGATCTGGAACCGGTTGCTTATGAGTTCTTTACTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATTGAAGCTCTCTCATGTGTTCCTTCTCCTGAACTGGCTCTCAGATTATATCTGCAGTGTGCAGAGgtattgctgtaacaattgatttatgctttccataactctgcatatcatgtaactacctttcatattacag
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