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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGGCTCTGTTGGTGCTACTATCCGTGTCTACATCGAGCAGTATGAGAAGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatccgcgctgtatattggctttgccttttggaccgttttccgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatccag

Basic information

species Oryza sativa
transcript LOC_Os03g50480.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G109383_T02 (Zea mays), 5'ss of exon 17
AACTGGCTCTGTTGGTGCTACTATCCGTGTCTACATCGAGCAGTATGAGAAGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatccgcgctgtatattggctttgccttttggaccgttttccgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatccag-
||| || ||||||||||| || ||||||||||||||||||||||| |||| ||| || || ||||||||||||||||| ||||| ||||||||||| ||||||||| | |  |  ||      |||| |||| ||| ||   ||  | |||||   |  |  |||||   |||| |    | |  | ||   |   |   | ||  | ||||   
AACCGGTTCTGTTGGTGCCACCATCCGTGTCTACATCGAGCAGTACGAGAGGGACTCCTCTAAGACCGGCAGGGATTCACAGGACGCCCTTGCTCCGCTGgtaagatacctaccatgc-----ggctatgccctttcga---ttcacagagca---taacataccttgggcttctg----tgaaactgcgtttactaatttgtgtctcatcccag

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 17
AACTGGCTCTGTTGGTGCTACTATCCGTGTCTACATCGAGCAGTATGAGAAGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatccgcgctgtatattggctttgccttttggaccgttttccgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatccag
||| || ||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| |    | | ||   || | ||| |      ||   |  |  | |  |      | | | |||   |||   |  |  | | ||  ||| |  ||| | ||       
AACCGGTTCTGTTGGTGCCACCATCCGTGTCTACATCGAGCAATACGAGAAGGATTCCTCCAAGACCGGCAGGGATTCACAGGAGGCCCTTGCTCCACTGgtaagataatttccccgtccttttgatttacagagctgaatatactaggggtgaa-----gaaacatttggatcatcatcca--ttaccacctctaagaatcagatt-------

upper sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 17
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 5'ss of exon 18
AACTGGCTCTGTTGGTGCTACTATCCGTGTCTACATCGAGCAGTATGAGAAGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc-cgcgctgtat-attggctttgccttttggaccgttttccgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatccag
||||||||| |  ||||| || ||||||||||| || |||||||||||||||||||| || ||||| || |||||||| || || ||||||| |||||| || ||||||| | | || | | ||  |   ||  | |    | | |||  || ||  | |   | |  |   ||    | || |   |||                          
AACTGGCTCAGAAGGTGCAACCATCCGTGTCTATATTGAGCAGTATGAGAAGGATTCGTCAAAGACTGGGAGGGATTCTCAAGAAGCCCTTGGTCCTCTTgtgagacatctctctctcttttatcaggactgtttatcaccctgctttt-gatcatatcttttggc--tgacctatgcatttgatcccag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88906039|gb|CI089625.1|CI089625
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88908259|gb|CI090852.1|CI090852
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88270362|gb|CI385620.1|CI385620
EST:     AGGATTCTTCCAAGACCGCCAGGGATTCCCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88840520|gb|CI079974.1|CI079974
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTAGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29671541|gb|CB667816.1|CB667816
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|58663229|gb|CK051915.1|CK051915
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88983385|gb|CI028621.1|CI028621
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|15853002|gb|BI805798.1|BI805798
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAA-GATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88295690|gb|CI530253.1|CI530253
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29682385|gb|CB678660.1|CB678660
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGCCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86836105|gb|CI346160.1|CI346160
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88304742|gb|CI520597.1|CI520597
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|3767813|gb|AU031840.1|AU031840
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29689599|gb|CB685874.1|CB685874
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|58679829|gb|CK068516.1|CK068516
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88248753|gb|CI248602.1|CI248602
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88965715|gb|CI006605.1|CI006605
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86494207|gb|CI136840.1|CI136840
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88252219|gb|CI350647.1|CI350647
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86433328|gb|CI093671.1|CI093671
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29671585|gb|CB667860.1|CB667860
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89175546|gb|CI042567.1|CI042567
EST:     AGAATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89175641|gb|CI042662.1|CI042662
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86494708|gb|CI137341.1|CI137341
EST:     AGGATTTTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86479043|gb|CI121676.1|CI121676
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88219887|gb|CI219447.1|CI219447
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|7332534|gb|AU085880.1|AU085880
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88831443|gb|CI083837.1|CI083837
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88902184|gb|CI374792.1|CI374792
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|8324586|gb|AU091730.1|AU091730
EST:     ACCGGCAGGGATCCGCAGGATGCCCTTGCTCCTCTG                         GTTGATG-TGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: ACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|33656202|gb|CF278816.1|CF278816
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88554537|gb|CI484727.1|CI484727
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88274732|gb|CI395138.1|CI395138
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|58662891|gb|CK051577.1|CK051577
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88461491|gb|CI526999.1|CI526999
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88250414|gb|CI348644.1|CI348644
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|8856483|gb|AU093801.1|AU093801
EST:     AGGATTCTTCCAAGNCCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86866331|gb|CI336942.1|CI336942
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|15855630|gb|BI808442.1|BI808442
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89192998|gb|CI050296.1|CI050296
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89174464|gb|CI110662.1|CI110662
EST:     AGGATTCTTCCAAGACCGNCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88414031|gb|CI531003.1|CI531003
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATC
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCT-Ggtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATC
EST: gi|10931022|gb|AU161296.1|AU161296
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88272851|gb|CI386111.1|CI386111
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89166801|gb|CI104087.1|CI104087
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89180345|gb|CI044624.1|CI044624
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89181096|gb|CI045179.1|CI045179
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88260323|gb|CI362616.1|CI362616
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88989284|gb|CI043783.1|CI043783
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86885984|gb|CI319832.1|CI319832
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86523041|gb|CI163247.1|CI163247
EST:     AAGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89195981|gb|CI395399.1|CI395399
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29618781|gb|CB623793.1|CB623793
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|51946022|gb|CV152363.1|CV152363
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86885865|gb|CI295888.1|CI295888
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88842555|gb|CI081811.1|CI081811
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|15008417|gb|AU222805.1|AU222805
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88267167|gb|CI379102.1|CI379102
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCA-GATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29614792|gb|CB619805.1|CB619805
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88840707|gb|CI080161.1|CI080161
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|29664694|gb|CB660969.1|CB660969
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|89162476|gb|CI099168.1|CI099168
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86822251|gb|CI357866.1|CI357866
EST:     TTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: TTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|87024221|gb|CI256962.1|CI256962
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88460347|gb|CI529422.1|CI529422
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|3759828|gb|C97086.1|C97086
EST:     AGGA-TCTTCAAAGACCGNCAGGGATTCGCAGGATGCCCTNGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|8856753|gb|AU094071.1|AU094071
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|58669796|gb|CK058482.1|CK058482
EST:     GGATTCTTCCAAGACCCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: GGATTCTTCCAAGA-CCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|15854490|gb|BI807286.1|BI807286
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|163927288|gb|EG710275.1|EG710275
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|86861329|gb|CI328102.1|CI328102
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88983116|gb|CI020680.1|CI020680
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|15855570|gb|BI808382.1|BI808382
EST:     AGGATTCTTCCAAGACCGCCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|88842659|gb|CI081915.1|CI081915
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
EST: gi|44669605|gb|CR283039.1|CR283039
EST:     AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTG                         GTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT
genomic: AGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 75 (downstream exon)
Score: 263

AACTGGCTCTGTTGGTGCTACTATCCGTGTCTACATCGAGCAGTATGAGAAGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatc ... ctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCTGCTCCCACCGTCATCACATAAACTTTTCAAGAGCCATTCTAGAATGCTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTGGCTCTGTTGGTGCTACTATCCGTGTCTACATCGAGCAGTATGAGAAGGATTCTTCCAAGACCGGCAGGGATTCGCAGGATGCCCTTGCTCCTCTGgtaagacatccgcgctgtatattggctttgccttttggaccgttttccgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC