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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACTGGAGgtatgttgtcttactcttattgtcatgcttcaacaatttgggattattagtttctcaaaaacctttttatttgcag

Basic information

species Oryza sativa
transcript LOC_Os03g24220.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88694289|gb|CI738327.1|CI738327
EST:     TGAGGAATGGGAAACTGGAG                         GTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
genomic: TGAGGAATGGGAAACTGGAGgtatgttgtc ... ttatttgcagGTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
EST: gi|58596217|gb|CK006745.1|CK006745
EST:     CTCATTGAGGAATGGGAAACTGGAG                         GTCACTGAAATTTTCAACTTTTCACAAGATGATTGGGTGACTGAAGACATG
genomic: CTCATTGAGGAATGGGAAACTGGAGgtatgttgtc ... ttatttgcagGTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
EST: gi|88351837|gb|CI624642.1|CI624642
EST:     CTCATTGAGGAATGGGAAACTGGAG                         GTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
genomic: CTCATTGAGGAATGGGAAACTGGAGgtatgttgtc ... ttatttgcagGTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
EST: gi|25798468|gb|CA754429.1|CA754429
EST:     CTCATTGAGGAATGGGAAACTGGAG                         GTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
genomic: CTCATTGAGGAATGGGAAACTGGAGgtatgttgtc ... ttatttgcagGTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
EST: gi|396941448|gb|HO188657.1|HO188657
EST:     CTCATTGAGGAATGGGAAACTGGAG                         GTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
genomic: CTCATTGAGGAATGGGAAACTGGAGgtatgttgtc ... ttatttgcagGTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
EST: gi|88722817|gb|CI746327.1|CI746327
EST:     CTCATTGAGGAATGGGAAACTGGAG                         GTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTG
genomic: CTCATTGAGGAATGGGAAACTGGAGgtatgttgtc ... ttatttgcagGTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTG
EST: gi|33674859|gb|CF303098.1|CF303098
EST:     CTCATTGAGGAATGGGAAACTGGAG                         GTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
genomic: CTCATTGAGGAATGGGAAACTGGAGgtatgttgtc ... ttatttgcagGTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
EST: gi|58674368|gb|CK063054.1|CK063054
EST:     CTCATTGAGGAATGGGAAACTGGAG                         GTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
genomic: CTCATTGAGGAATGGGAAACTGGAGgtatgttgtc ... ttatttgcagGTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
EST: gi|58610643|gb|CK038355.1|CK038355
EST:     CTCATTGAGGAATGGGAAACTGGAG                         GTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
genomic: CTCATTGAGGAATGGGAAACTGGAGgtatgttgtc ... ttatttgcagGTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
EST: gi|58672994|gb|CK061680.1|CK061680
EST:     CTCATTGAGGAATGGGAAACTGGAG                         GTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG
genomic: CTCATTGAGGAATGGGAAACTGGAGgtatgttgtc ... ttatttgcagGTCACTGAAATTTTCAACTTTTCACAAGATGATTTGCTGACTGAAGACATG