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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGACTAGCACACTCCAGAGGTCAATATTAACAGCGCAGCCTATCATTGGATTTCCAAAGgtcagtttgctctaggaaattaccaaactcaagtaagaaaattttgtctcaacttttagctatcaaacctgacactggcatgttttccatgtgtcctctag

Basic information

species Oryza sativa
transcript LOC_Os03g18310.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 16
ATATGGACTAGCACACTCCAGAGGTCAATATTAACAGCGCAGCCTATCATTGGATTTCCAAAGgtcagtttgctctaggaaattaccaaactcaagtaagaaaattttgtctcaacttttagctatcaaacctgacactggcatgttt-tccatgtgtcct-ctag
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ATATGGACTAGCACACTCCAGAGAACAATATTAACAGCACATCCGATCATTGGTTTTCCAAAGgttagct-atcataggtgataaaataggcctagcaaga----ctgctctctacttatagaagtgttacc-aaaactaacttgtttctcctcatgttcttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643803|gb|CB648810.1|CB648810
EST:     CACTCCAGAGGTCAATATTAACAGCGCAGCCTATCATTGGATTTCCAAAG                         ATACAATGGCGTGCACTTGATGAAATAAACGCTGGCATCTGTGATGGGATG
genomic: CACTCCAGAGGTCAATATTAACAGCGCAGCCTATCATTGGATTTCCAAAGgtcagtttgc ... tgtcctctagATACAATGGCGTGCACTTGATGAAATAAACGCTGGCATCTGTGATGGGATG
EST: gi|88431147|gb|CI574318.1|CI574318
EST:     CACTCCAGAGGTCAATATTAACAGCGCAGCCTATCATTGGATTTCCAAAG                         ATACAATGGGGTGCACTTGATGAAATAAACGCTGGCATCTGTGATGGGATG
genomic: CACTCCAGAGGTCAATATTAACAGCGCAGCCTATCATTGGATTTCCAAAGgtcagtttgc ... tgtcctctagATACAATGGCGTGCACTTGATGAAATAAACGCTGGCATCTGTGATGGGATG