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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGAAGGCAGACATTACCTGGATTGATTAAAGATGGCATGAGTGCTCTTTCACGATATTATTTGAATAATTTTCATGACGGAGTGAGACAAgtaagtgatatccactgccagttctgatatacatagtaaattgcttccctaatatttggtcttgtcaaatcatattttatcagtgaatgatcctttcagg...

Basic information

species Oryza sativa
transcript LOC_Os03g18080.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G047894_T02 (Zea mays), 5'ss of exon 17
GTATGGAAGGCAGACATTACCTGGATTGATTAAAGATGGCATGAGTGCTCTTTCACGATATTATTTGAATAATTTTCATGACGGAGTGAGACAAgtaagtgat-atccactgccagttctgatatacatagtaa--attgcttccctaatat-ttggtcttgtcaaatcatattttatcagtgaatgatcctttcagg
 ||||||||||||||||| |||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||  | ||    |||   ||    ||  | || ||   || ||| | || |    ||  ||||||  || | |   ||  ||||        |  | |  
ATATGGAAGGCAGACATTGCCTGGACTAATTAAAGATGGAATGAGTGCTCTTTCAAGATATTATTTGAATAATTTTCATGACGGAGTGCGGCAAgtaagttcttatgttatgctcattgctctagtcctattagcgatcgctcctcttaggcatttttcttgtacaaccttcactt--cagtttccagagcactta--

upper sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GLYMA18G43270.1 (Glycine max), 5'ss of exon 11
GTATGGAAGGCAGACATTACCTGGATTGATTAAAGATGGCATGAGTGCTCTTTCACGATATTATTTGAATAATTTTCATGACGGAGTGAGACAAgtaagtgatatccactgc-cagttctgatatacatagtaaattgcttccctaatatttggtcttgtcaaatcatattttatcagtga-atgatcctttcagg
 ||||| |  || ||| || || || |||||||||||||  ||||||| ||||| |||||||| |||||||| ||||| || ||  |  |||| | ||||    |    |||  | |||| |       | |   ||   |     | | |   |||   ||||   ||||| || |||   ||||   |||||| 
ATATGGGAAACAAACAATAACTAGAATGATTAAAGATGGGGTGAGTGCACTTTCCCGATATTACTTGAATAACTTTCAGGATGGGATTCGACAGGCAAgttcatttatgtgcataattcttac-----cactcgtttaaataaaggaaactcaatct---caaa--gtatttaataagtttcatgactttttcag-