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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATACAGCAGAGAGCAGTCGAATATTTTGAACTAAGCAGGAAAGGTGCTGCTTTGGCAGACGTGTTAGCAGAAATGCCGAAATTTCCTGAACGTGAGgtaaattttcatcctgttgcatgtatactcacagtttacggtattaaatcttcttctagccacatatattctcacactttagtgtatgaaatctgcatcttacatgtgtactctcaatttactatataacttatcttgcattcgttccattaacaatgatttgtttttcttactatggatttacttgtcgaatcttag

Basic information

species Oryza sativa
transcript LOC_Os03g02150.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02150.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G092741_T01 (Zea mays), 5'ss of exon 3
TGAAATACAGCAGAGAGCAGTCGAATATTTTGAACTAAGCAGGAAAGGTGCTGCTTTGGCAGACGTGTTAGCAGAAATGCCGAAATTTCCTGAACGTGAGgtaaattttcatcctgttgcatgtatactcacagtttacggtattaaatcttcttctagccacatatattctcacactttagtgtatgaaatctgcatcttacatgtgtactctcaatttactatataacttatcttgcattcgttccattaacaatgatttgtttttcttactatggatttacttgtcgaatcttag
||||||||| ||||||||||| || |||||||||||||||||||||||  ||||||||||||| ||||| || |||||||| ||||| ||||| ||||||||||         |  ||||  | ||||    | ||||   |  | ||| || | |||   | |   ||||   | | ||| |||  |  || |||    | ||                                                                                              
TGAAATACAACAGAGAGCAGTTGAGTATTTTGAACTAAGCAGGAAAGGCCCTGCTTTGGCAGATGTGTTGGCTGAAATGCCAAAATTCCCTGAGCGTGAGgtaa-------ctccattgctaggataca---attttatcttggtcaat-ttatgctattgagaagaattcctcccccttactgtgggttatttgccaaatccag---------------------------------------------------------------------------------------------

upper sequence: LOC_Os03g02150.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G137236_T01 (Zea mays), 5'ss of exon 18
TGAAATACAGCAGAGAGCAGTCGAATATTTTGAACTAAGCAGGAAAGGTGCTGCTTTGGCAGACGTGTTAGCAGAAATGCCGAAATTTCCTGAACGTGAGgtaaattttcatcctgttgcatgtatactcacagtttacggtattaaatcttcttctagccacatatattctcacactttagtgtatgaaatctgcatcttacatgtgtactctcaatttactatataacttatcttgcattcgttccattaacaatgatttgtttttcttactatggatttacttgtcgaatcttag
||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||   | |||    | | |    | |||   ||  |||  | |     || ||| |   | |   ||| || |   ||| |||  |  || |||    |  |                                                                                              
TGAAATACAACAGAGAGCAGTTGAATATTTTGAACTAAGCAGGAAAGGTCCTGCTTTGGCAGATGTGTTGGCTGAAATGCCAAAATTCCCTGAACGTGAGgtaa--ctccattg-ataggacactttctcttggtcaacgtcaat-----ttattccattgagaaggattttccc--cttactgtgggttatttgccaaatctag---------------------------------------------------------------------------------------------