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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATCAATCTCAAATATGGAGGCTAAGGCAAAAGAATGTATTGAGGTACTCCCAGAATGTTATTATCCTTGGTTTGCACAATCCATGGTCATGAAAAGgtaccgtattaatatttctccctttctatttttgtgatttttgtgaatatatcgaattataattatatgtttatcttggcag

Basic information

species Oryza sativa
transcript LOC_Os03g01240.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G424289_T01 (Zea mays), 5'ss of exon 4
ATATATCAATCTCAAATATGGAGGCTAAGGCAAAAGAATGTATTGAGGTACTCCCAGAATGTTATTATCCTTGGTTTGCACAATCCATGGTCATGAAAAGgtaccgtattaatatttctccctttctatttttgtgatttttgtgaatatatcgaattataattata--tgtttatcttggcag
||||||| |||||||||||||| ||||||||||| |||| ||   ||||  | |  |||   |||||||||||||||||||||| |||||||||||||||||| | |  | | ||| ||   ||| |||      ||||| | |||  ||   ||  ||||   ||   || | |||||  |||
ATATATCCATCTCAAATATGGAAGCTAAGGCAAAGGAATTTAACAAGGTCATACAGGAACAGTATTATCCTTGGTTTGCACAATACATGGTCATGAAAAGgtatcattctca-attactgattttgtata-----gatttgtctgacaatgctgaggtatacaaatcactgctcatcttaacag

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G082573_T01 (Zea mays), 5'ss of exon 4
ATATATCAATCTCAAATATGGAGGCTAAGGCAAAAGAATGTATTGAGGTACTCCCAGAATGTTATTATCCTTGGTTTGCACAATCCATGGTCATGAAAAGgtaccgtattaatatttctccctttctatttttgtgatttttgtgaatatatcgaattataattata--tgtttatcttggcag
||||||| |||||||||||||| ||||||||||| |||| ||  |||||  | |  |||   |||||||||||||||||||||| |||||||||||||||||| | |  | | ||| ||   ||| |||      ||||| | |||  ||   ||  ||||   ||   || | |||||  |||
ATATATCCATCTCAAATATGGAAGCTAAGGCAAAGGAATTTAACGAGGTCATACAGGAACAGTATTATCCTTGGTTTGCACAATACATGGTCATGAAAAGgtatcattatca-attactgattttgtata-----gatttgtctgacaatgctgaggtatacaaatcactgctcatcttaacag

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G467385_T01 (Zea mays), 5'ss of exon 3
ATATATCAATCTCAAATATGGAGGCTAAGGCAAAAGAATGTATTGAGGTACTCCCAGAATGTTATTATCCTTGGTTTGCACAATCCATGGTCATGAAAAGgtaccgtattaatatttctccctttctatttttgtgatttttgtgaatatatcgaattataattata--tgtttatcttggcag
||||||| |||||||||||||| ||||||||||| |||| || ||||||  | |  |||   |||||| ||||||||||||||| |||||||||||||||||| | |  | | ||| ||   ||| |||      ||||| | |||  ||   ||  ||||   ||   || | |||||  |||
ATATATCCATCTCAAATATGGAAGCTAAGGCAAAGGAATTTAATGAGGTCATACAGGAACAGTATTATACTTGGTTTGCACAATACATGGTCATGAAAAGgtatcattctca-attactgattttgtata-----gatttgtctgacaatgctgaggtatacaaatcactgctcatcttaacag

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G435765_T01 (Zea mays), 5'ss of exon 4
ATATATCAATCTCAAATATGGAGGCTAAGGCAAAAGAATGTATTGAGGTACTCCCAGAATGTTATTATCCTTGGTTTGCACAATCCATGGTCATGAAAAGgtaccgtattaatatttctccctttctatttttgtgatttttgtgaatatatcgaattataattata--tgtttatcttggcag
||||||| |||||||||||||| ||||||||||| |||| ||  |||||  | |  |||    ||||||||||||||||||||| |||||||||||||||||| | |  | | ||| ||   ||| |||      ||||| | |||  ||   ||  ||||   ||   || | |||||  |||
ATATATCCATCTCAAATATGGAAGCTAAGGCAAAGGAATTTAACGAGGTCATACAGGAACAGCATTATCCTTGGTTTGCACAATACATGGTCATGAAAAGgtatcattctca-attactgattttgtata-----gatttgtctgacaatgctgaggtatacaaatcactgctcatcttaacag

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G414487_T01 (Zea mays), 5'ss of exon 3
ATATATCAATCTCAAATATGGAGGCTAAGGCAAAAGAATGTATTGAGGTACTCCCAGAATGTTATTATCCTTGGTTTGCACAATCCATGGTCATGAAAAGgtaccgtattaatatttctccctttctatttttgtgatttttgtgaatatatcgaattataattata--tgtttatcttggcag
||||||| |||||||||||||| ||||||||||| |||| || ||||||  | |  |||   |||||||||||||||||||||| |||||||||||||||||| | |  | | ||| ||   ||| |||      ||||| | |||  ||   ||  ||||   ||   || | |||||  |||
ATATATCCATCTCAAATATGGAAGCTAAGGCAAAGGAATTTAATGAGGTCATACAGGAACAATATTATCCTTGGTTTGCACAATACATGGTCATGAAAAGgtatcattctca-attactgattttgtata-----gatttgtctgacaatgctgaggtatacaaatcactgctaatcttaacag

upper sequence: LOC_Os03g01240.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G179406_T01 (Zea mays), 5'ss of exon 3
ATATATCAATCTCAAATATGGAGGCTAAGGCAAAAGAATGTATTGAGGTACTCCCAGAATGTTATTATCCTTGGTTTGCACAATCCATGGTCATGAAAAGgtaccgtattaatatttctccctttctatttttgtgatttttgtgaatatatcgaattataattata--tgtttatcttggcag
||||||| |||||||||||||| ||||||||||| |||| ||  |||||  | |  |||   |||||||||||||||||||||| |||||||||||||||||| | |  | | ||| ||   ||| |||      ||||| | |||  ||   ||  ||||   ||   || | |||||  |||
ATATATCCATCTCAAATATGGAAGCTAAGGCAAAGGAATTTAACGAGGTCATACAGGAACAGTATTATCCTTGGTTTGCACAATACATGGTCATGAAAAGgtatcattctca-attactgattttgtata-----gatttgtctgacaatgctgaggtatacaaatcactgctcatcttaacag