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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGCCCACAATATGGATGCGGATGTAAGGATCCAGTATAACGATCAGGAAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttctttgaccccatttttattcataaataatgctcttgtcaaagtaggtcaagtgacaattttgtgtctgatgttttcagtggtgattgttagg...

Basic information

species Oryza sativa
transcript LOC_Os02g58590.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58590.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G426275_T04 (Zea mays), 5'ss of exon 17
GAAAGCCCACAATATGGATGCGGATGTAAGGATCCAGTATAACGATCAGGAAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgt--ttacttctttgaccccatttttattcataaataatgctcttgtcaaagtaggtcaagtgacaattttgtgtctgatgttttcagtggtgattgttagg----------------------------------------------------------------------------
||||||||||||||||| || ||||||||||||||| ||  |||| || ||||  || |||| |||||||||||||||||||||||| ||||||||||||||  ||| |||||| |||| | | |       | |||||   || |    | || || |||  ||| ||||   | || |||       | |  ||| |  |                                                                            
GAAAGCCCACAATATGGCTGAGGATGTAAGGATCCAATACGACGACCAAGAAGGTTTCGAGCAGATAGCTCGTCAATTTGGAATATTCGAAGAATGGAAGgtgtttaattctttaacccaaatct-------agataatttcctcg----attatgtgaagcaacagttttccatatgttgtagatgtagttatttgctctgttatcaattgctgatttggattcgaaaagaagaagaatgcatcattattctttttgttttgtcaaaaaaaatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88435088|gb|CI504430.1|CI504430
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88562337|gb|CI493054.1|CI493054
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88439875|gb|CI541432.1|CI541432
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88419099|gb|CI511251.1|CI511251
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88967141|gb|CI392103.1|CI392103
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|86428491|gb|CI075172.1|CI075172
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88568091|gb|CI498808.1|CI498808
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88287308|gb|CI502665.1|CI502665
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88287591|gb|CI507481.1|CI507481
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88416756|gb|CI546035.1|CI546035
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88434547|gb|CI501973.1|CI501973
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCG-TACNAA
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTAC-AA
EST: gi|88569017|gb|CI499734.1|CI499734
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTNGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88454475|gb|CI509248.1|CI509248
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGNCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88276423|gb|CI397027.1|CI397027
EST:     AGGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88836323|gb|CI078220.1|CI078220
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88561190|gb|CI491907.1|CI491907
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88959958|gb|CI381836.1|CI381836
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGCAG                         GATGGCATTCCAAGAACAGCTTATAAAGGATTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88429458|gb|CI557190.1|CI557190
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|89174306|gb|CI110504.1|CI110504
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88561334|gb|CI492051.1|CI492051
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|44665380|gb|CR278814.1|CR278814
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88837996|gb|CI371574.1|CI371574
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88568609|gb|CI499326.1|CI499326
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATG-CNATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAA
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGC-ATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAA
EST: gi|88285444|gb|CI507314.1|CI507314
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTANTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88567130|gb|CI497847.1|CI497847
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88569263|gb|CI499980.1|CI499980
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88566196|gb|CI496913.1|CI496913
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88568308|gb|CI499025.1|CI499025
EST:     AAGACTTTGANCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88567679|gb|CI498396.1|CI498396
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|29628399|gb|CB633410.1|CB633410
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88292340|gb|CI500288.1|CI500288
EST:     AGACTTTGAGC-GANTAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AGACTTTGAGCGGA-TAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88561724|gb|CI492441.1|CI492441
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88285773|gb|CI512430.1|CI512430
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88564789|gb|CI495506.1|CI495506
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGANTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88562718|gb|CI493435.1|CI493435
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88376730|gb|CI538034.1|CI538034
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88366750|gb|CI558924.1|CI558924
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88379718|gb|CI503917.1|CI503917
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGGATGGAAG                         GATGGCATTCCAAGGACAGCTTATAAAGGAGTANTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88301438|gb|CI500805.1|CI500805
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88569255|gb|CI499972.1|CI499972
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88467848|gb|CI509663.1|CI509663
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|86483347|gb|CI125980.1|CI125980
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88461780|gb|CI506856.1|CI506856
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|86433973|gb|CI094316.1|CI094316
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|86491170|gb|CI133803.1|CI133803
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|313081063|gb|HO213649.1|HO213649
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGT
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGT
EST: gi|88222701|gb|CI220842.1|CI220842
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|29633687|gb|CB638696.1|CB638696
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88287403|gb|CI505094.1|CI505094
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88565201|gb|CI495918.1|CI495918
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAA
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAA-Ggtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAA
EST: gi|88245802|gb|CI245651.1|CI245651
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88285570|gb|CI507440.1|CI507440
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88564312|gb|CI495029.1|CI495029
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88268913|gb|CI377817.1|CI377817
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88418574|gb|CI504198.1|CI504198
EST:     AGACTTTGAGC-GATAGGCTCGTCAATTTGGGATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTANTATTCTTCCGGTACAAG
genomic: AGACTTTGAGCGGATA-GCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|58688254|gb|CK076941.1|CK076941
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|29666804|gb|CB663079.1|CB663079
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88418693|gb|CI506454.1|CI506454
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88532003|gb|CI461457.1|CI461457
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88452536|gb|CI558197.1|CI558197
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|33808666|gb|CF330218.1|CF330218
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88374006|gb|CI508625.1|CI508625
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|89176118|gb|CI043139.1|CI043139
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88419037|gb|CI508990.1|CI508990
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88467725|gb|CI507150.1|CI507150
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88840918|gb|CI000880.1|CI000880
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88435364|gb|CI509035.1|CI509035
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88435027|gb|CI504369.1|CI504369
EST:     AAGACTTTGAGCGGATAGCTCTTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTANTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88834475|gb|CI077758.1|CI077758
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|88318531|gb|CI505935.1|CI505935
EST:     AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGANTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
EST: gi|218489065|gb|FG948408.1|FG948408
EST:     AAGACTTTGAGCGGATAGCTTGTCAATTTGGAATATTTGAAGAATGGAAG                         GATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG
genomic: AAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 51 (upstream exon), 27 (downstream exon)
Score: 7

GAAAGCCCACAATATGGATGCGGATGTAAGGATCCAGTATAACGATCAGGAAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttct ... tgtttttcagGATGGCATTCCAAGAACAGCTTATAAAGGAGTAGTAGTCTTCCGGTACAAGAGTAGTCGAAGACGAATATACCTCGTTGGTCCGGATTCCCTCAGTCAGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAAGCCCACAATATGGATGCGGATGTAAGGATCCAGTATAACGATCAGGAAGACTTTGAGCGGATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGgtttacttctttgaccccatttttattcataaataatgctcttgtcaaagtaggtcaagtgacaattttgtgtctgatgttttcagtggtgattgttagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG