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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCAAATCCGCTCCTGCAGTACCTCAAGATATGGATTTGCTTGATGGTCTGCCATCAAATACATCTGTTTCTGgttagtttgatgttagatatttgctacaaagtactgaatataatactgtcatgattactaataaacctccttatttgagcag

Basic information

species Oryza sativa
transcript LOC_Os02g56110.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86513303|gb|CI155936.1|CI155936
EST:     TTTGTCATCAAGTACATCTGTTTCTG                         GGACCAAATCCGCTCCTGCAGTACCTCAAGATATGGATTTGCTTGATGGTC
genomic: TTTGTCATCAAGTACATCTGTTTCTGgttagtttcg ... tccattgcagGGACCAAATCCGCTCCTGCAGTACCTCAAGATATGGATTTGCTTGATGGTC
EST: gi|87035932|gb|CI190554.1|CI190554
EST:     GGTCTGCCATCAAATACATCTGTTTCTG                         GACCTGTTAATCACTCATCAATAACAGCTTTCCAGAGTGCAACCTTGAAGA
genomic: GGTCTGCCATCAAATACATCTGTTTCTGgttagtttga ... atttgagcagGACCTGTTAATCACTCATCAATAACAGCTTTCCAGAGTGCAACCTTGAAGA
EST: gi|27578089|gb|CB000784.1|CB000784
EST:     TGAAGCTACGGATGTTCTCAGTAGTTTGTCATCAAGTACATCTGTTTCTG                         GGACCAAATCCGCTCCTGCAGTACCTCAAGATATGGATTTGCTTGATGGTC
genomic: TGAAGCTACGGATGTTCTCAGTAGTTTGTCATCAAGTACATCTGTTTCTGgttagtttcg ... tccattgcagGGACCAAATCCGCTCCTGCAGTACCTCAAGATATGGATTTGCTTGATGGTC
EST: gi|87035931|gb|CI190553.1|CI190553
EST:     ATACATCTGTTTCTG                         GACCTGTTAATCACTCATCAATAACAGCTTTCCAGAGTGCAACCTTGAAGA
genomic: ATACATCTGTTTCTGgttagtttga ... atttgagcagGACCTGTTAATCACTCATCAATAACAGCTTTCCAGAGTGCAACCTTGAAGA