Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATATATCTTCACAAAGAGCATACCTCGTTCATGGCGCGTTTCGGAAGCTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagcaagcaccgtcccagataacaaaagctaagcaactccattctccttatggtccactttataaatgctgttctaacttgttttttcttcag

Basic information

species Oryza sativa
transcript LOC_Os02g07760.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 18
lower sequence: GRMZM2G119482_T01 (Zea mays), 5'ss of exon 18
TGCATATATCTTCACAAAGAGCATACCTCGTTCATGGCGCGTTTCGGAAGCTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagca---agcaccgtcccagataacaaaagctaagcaactccattctccttatggtccactt-tataaatgctgttctaacttgttttttcttcag--
|||||| || || || ||||||||||||||||||||||| || || ||| ||||||| || ||  |||| || || |||||||| || || ||||| |||||||||| ||   |  |   | ||   |  | || |    ||   |   || || | |      |||| | | ||   ||  | |  ||||       |  |  
TGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTATCTGAATCTCTTGAGTACGGCTTAGTTGGGGTAAACGAGGGAATTATTTCAACGGAGgtaagaaacacccaataatattccctctttctaagg----gcgttttatttgtcataagtcaaaacttctcttaactttgaccaattttgtaggaaaatatgtt

upper sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 18
lower sequence: GRMZM2G128114_T04 (Zea mays), 5'ss of exon 1
TGCATATATCTTCACAAAGAGCATACCTCGTTCATGGCGCGTTTCGGAAGCTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagcaagcaccg-tcccagataacaaaagctaagcaactccattctcctta-tggtccactttataaatgctgttctaacttgttttttcttcag
|||||| || || || ||||||||||||||||||||||| || || ||| |||||||||| ||  |||| || || ||||||||||| || |||||||||||||||| ||  ||  | | |       |     ||||    |       |  ||| |  |  | |   |  |  ||  |||||||| |       |   
TGCATACATATTTACCAAGAGCATACCTCGTTCATGGCGTGTATCCGAATCTCTTGAATACGGCTTAGTTGGGGTAAACGAGGGGATTATTTCAACAGAGgtaagaaacagccaatgatactccccccccctctctaaaatgcagggagttatttagttctgtattaagtctaaacttctctaacttttgaccaaattta

upper sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 18
lower sequence: AT1G79440.1 (Arabidopsis thaliana), 5'ss of exon 18
TGCATATATCTTCACAAAGAGCATACCTCGTTCATGGCGCGTTTCGGAAGCTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagcaagcaccgtcccagataacaaaagctaagcaactccattctccttatggtccactttataaatgctgttctaacttgttttttcttcag
||| ||||| |||||||| ||  | |   | || ||||| || |  ||||| |||||||||||||| || || |||||||| ||  |||| |||||||||||||||             ||||   |  ||||      |||  | ||||||| ||  |   |  || | ||||     | || | ||||   | |||
TGCTTATATATTCACAAACAGTGTCCAAAGATCTTGGCGTGTATTTGAAGCACTTGAATATGGACTTGTAGGGGTGAACGAAGGACTCATATCAACAGAGgtaaga-------------ccagg-gatgaaag------aaccacgttctcctaattata-gccatacatatgc-----ttacatcttttgattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86496493|gb|CI139126.1|CI139126
EST:     CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAG                         GTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
genomic: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagca ... ttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
EST: gi|218485663|gb|FG949794.1|FG949794
EST:     CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCGTCTCAACAGAG                         GTTGCGCCATTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
genomic: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagca ... ttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
EST: gi|88227449|gb|CI226929.1|CI226929
EST:     CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAG                         GTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
genomic: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagca ... ttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
EST: gi|218498992|gb|FG968229.1|FG968229
EST:     CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCGTCTCAACAGAG                         GTTGCGCCATTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA
genomic: CTCTTGAATATGGACTAGTCGGTGTGAACGAGGGGATCATCTCAACAGAGgtaagaagca ... ttttcttcagGTTGCGCCGTTTGGCGGCGTCAAGCAATCTGGCCTTGGGAGAGAAGGATCA