Skip to another splice site:
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 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
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 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCCGCCGATGCAGGTGAGCGCCAGCTACTATGGCGCCGCGGAGCTCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcatttgcactgtgtttagataaacaaaagctttattgaactcaacgaattacattaagatgatgatagaattgtaccgataacaacttttgattgtgatttggcgatgatttcagagagaaattgggtttgtgttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g72340.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g72340.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G032496_T01 (Zea mays), 5'ss of exon 8
----TCGCCGCCGATGCAGGTGAGCGCCAGCTACTATGGCGCCGCGGAGCTCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcatttgcactgtgtttagataaacaaaagctttattgaactcaac-gaattacattaagatgatgatagaattgtaccgataacaacttttgattgtgatttggcgatgatttcagagagaaattgggtttgtgttgcag
    || |||||||||||| ||||||| |||||||| |||||||||||||| ||| | || |||||   ||||| ||| || ||||| |||||||||||||||||   || |||    | || ||         |   | |   ||   ||  | ||  | |    |  || |    ||   ||   |         || |  | || || |  |                                  
CGGCTCCCCGCCGATGCAGATGAGCGCGAGCTACTACGGCGCCGCGGAGCTGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagctttttgtttttgcttt------tgagctcctggctggcatcggccgagctgctgcgaagtggtcggggaggagtgatggctctcggcttcgtgtttgtttcgcag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88830662|gb|CI078106.1|CI078106
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88907247|gb|CI090041.1|CI090041
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86260581|gb|CI066454.1|CI066454
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88970138|gb|CI383640.1|CI383640
EST:     CCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86478567|gb|CI121200.1|CI121200
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86434481|gb|CI094824.1|CI094824
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87027586|gb|CI272351.1|CI272351
EST:     GCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGTTCG
genomic: GCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87030204|gb|CI270214.1|CI270214
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86864205|gb|CI334031.1|CI334031
EST:     CCGCGCGACGCATAACCACAAGCTCTTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|24208447|gb|AU225474.1|AU225474
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88828187|gb|CI000296.1|CI000296
EST:     CCGCGCGACGCATAACCGCAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|29622529|gb|CB627540.1|CB627540
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87034572|gb|CI189196.1|CI189196
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88234074|gb|CI233923.1|CI233923
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86433478|gb|CI093821.1|CI093821
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86425442|gb|CI070539.1|CI070539
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88234480|gb|CI234329.1|CI234329
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88236897|gb|CI234674.1|CI234674
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86514464|gb|CI157097.1|CI157097
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTG-                         ---CATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87031833|gb|CI272534.1|CI272534
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88852371|gb|CI374139.1|CI374139
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCC
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87040070|gb|CI193279.1|CI193279
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88236249|gb|CI235451.1|CI235451
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGTTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86518440|gb|CI158646.1|CI158646
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86479513|gb|CI122146.1|CI122146
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88966597|gb|CI353148.1|CI353148
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86827943|gb|CI274871.1|CI274871
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86543127|gb|CI183333.1|CI183333
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86479302|gb|CI121935.1|CI121935
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88539750|gb|CI469735.1|CI469735
EST:     CGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86481309|gb|CI123942.1|CI123942
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86823634|gb|CI258702.1|CI258702
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCC
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86526945|gb|CI167151.1|CI167151
EST:     CCGCTCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|38479961|gb|CF964050.1|CF964050
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTG-                         ---CATCTTGATCACAAGCACATGGGGCTGGGAGGGGA
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGA
EST: gi|88232922|gb|CI232166.1|CI232166
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|29677248|gb|CB673523.1|CB673523
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88201658|gb|CI202013.1|CI202013
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86827256|gb|CI270925.1|CI270925
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86597178|gb|CI272773.1|CI272773
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87016583|gb|CI275585.1|CI275585
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86518015|gb|CI158221.1|CI158221
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86523443|gb|CI163649.1|CI163649
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88201594|gb|CI201949.1|CI201949
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87027578|gb|CI272343.1|CI272343
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87021153|gb|CI271960.1|CI271960
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86544766|gb|CI184972.1|CI184972
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86477729|gb|CI120362.1|CI120362
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86480840|gb|CI123473.1|CI123473
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88472614|gb|CI409885.1|CI409885
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86827881|gb|CI274827.1|CI274827
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86422520|gb|CI060093.1|CI060093
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88473809|gb|CI411080.1|CI411080
EST:     CGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|29621653|gb|CB626664.1|CB626664
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTG-                         ---CATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86434874|gb|CI106107.1|CI106107
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCC
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88247549|gb|CI247398.1|CI247398
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86507661|gb|CI150294.1|CI150294
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87031726|gb|CI272427.1|CI272427
EST:     CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----G                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcattt ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGCCGCCGATGCAGGTGAGCGCCAGCTACTATGGCGCCGCGGAGCTCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGGgttcgcatttgcactgtgtttagataaacaaaagctttattgaactcaacgaattacattaagatgatgatagaattgtaccgataacaacttttgattgtgatttggcgatgatttcagagagaaattgggtttgtgttgcag

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