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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGTCGCCGCCGATGCAGGTGAGCGCCAGCTACTATGGCGCCGCGGAGCTCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgcatttgcactgtgtttagataaacaaaagctttattgaactcaacgaattacattaagatgatgatagaattgtaccgataacaacttttgattgtgatttggcgatgatttcagagagaaattgggtttgtgttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g72340.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g72340.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G032496_T01 (Zea mays), 5'ss of exon 8
CGAGTCGCCGCCGATGCAGGTGAGCGCCAGCTACTATGGCGCCGCGGAGCTCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgcatttgcactgtgtttagataaacaaaagctttattgaactcaac-gaattacattaagatgatgatagaattgtaccgataacaacttttgattgtgatttggcgatgatttcagagagaaattgggtttgtgttgcag
||  || |||||||||||| ||||||| |||||||| |||||||||||||| ||| | || |||||   ||||| ||| || ||||| |||||||||||||||||   || |||      |||||         |   | |   ||   ||  | ||  | |    |  || |    ||   ||   |         || |  | || || |  |                                  
CGGCTCCCCGCCGATGCAGATGAGCGCGAGCTACTACGGCGCCGCGGAGCTGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagctttt------tgtttttgcttttgagctcctggctggcatcggccgagctgctgcgaagtggtcggggaggagtgatggctctcggcttcgtgtttgtttcgcag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86597178|gb|CI272773.1|CI272773
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86543127|gb|CI183333.1|CI183333
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86425442|gb|CI070539.1|CI070539
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86544766|gb|CI184972.1|CI184972
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88473809|gb|CI411080.1|CI411080
EST:     CGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88236897|gb|CI234674.1|CI234674
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87031833|gb|CI272534.1|CI272534
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88970138|gb|CI383640.1|CI383640
EST:     CCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88201594|gb|CI201949.1|CI201949
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86507661|gb|CI150294.1|CI150294
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86523443|gb|CI163649.1|CI163649
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|38479961|gb|CF964050.1|CF964050
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGA
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGA
EST: gi|88907247|gb|CI090041.1|CI090041
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87031726|gb|CI272427.1|CI272427
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86422520|gb|CI060093.1|CI060093
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88472614|gb|CI409885.1|CI409885
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87030204|gb|CI270214.1|CI270214
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88234480|gb|CI234329.1|CI234329
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87027586|gb|CI272351.1|CI272351
EST:     GCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGTTCG
genomic: GCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88966597|gb|CI353148.1|CI353148
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86823634|gb|CI258702.1|CI258702
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCC
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87040070|gb|CI193279.1|CI193279
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|29622529|gb|CB627540.1|CB627540
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86479513|gb|CI122146.1|CI122146
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87016583|gb|CI275585.1|CI275585
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86434481|gb|CI094824.1|CI094824
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88852371|gb|CI374139.1|CI374139
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCC
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86518440|gb|CI158646.1|CI158646
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88830662|gb|CI078106.1|CI078106
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87034572|gb|CI189196.1|CI189196
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86514464|gb|CI157097.1|CI157097
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87027578|gb|CI272343.1|CI272343
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86827943|gb|CI274871.1|CI274871
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGGTGG                      
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGA----Ggtgggttcgc ... tgtgttg
EST: gi|86827881|gb|CI274827.1|CI274827
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86433478|gb|CI093821.1|CI093821
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88232922|gb|CI232166.1|CI232166
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|24208069|gb|AU225096.1|AU225096
EST:     ACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: ACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86477729|gb|CI120362.1|CI120362
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86526945|gb|CI167151.1|CI167151
EST:     TCGACCGCTCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88539750|gb|CI469735.1|CI469735
EST:     CGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: CGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86260581|gb|CI066454.1|CI066454
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86479302|gb|CI121935.1|CI121935
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88828187|gb|CI000296.1|CI000296
EST:     TCGACCGCGCGACGCATAACCGCAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88236249|gb|CI235451.1|CI235451
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGTTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|44668886|gb|CR282320.1|CR282320
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAA                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86827256|gb|CI270925.1|CI270925
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86481309|gb|CI123942.1|CI123942
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|29621653|gb|CB626664.1|CB626664
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88201658|gb|CI202013.1|CI202013
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88234074|gb|CI233923.1|CI233923
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86478567|gb|CI121200.1|CI121200
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86434874|gb|CI106107.1|CI106107
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCC
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|29677248|gb|CB673523.1|CB673523
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86518015|gb|CI158221.1|CI158221
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|88247549|gb|CI247398.1|CI247398
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86480840|gb|CI123473.1|CI123473
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|24208447|gb|AU225474.1|AU225474
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|87021153|gb|CI271960.1|CI271960
EST:     TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
EST: gi|86864205|gb|CI334031.1|CI334031
EST:     TCGACCGCGCGACGCATAACCACAAGCTCTTCAAGGGAGACGACATCGAG                         GTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG
genomic: TCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 54 (downstream exon)
Score: 20

CGAGTCGCCGCCGATGCAGGTGAGCGCCAGCTACTATGGCGCCGCGGAGCTCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgc ... tgtgttgcagGTGCATCTTGATCACAAGCACATGGGGCTGGGAGGGGACGACAGCTGGTCGCCGTGCGTGCACGAGCAGTACTTGCTGCCGCCGGCGAGATACGCCTTCT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGTCGCCGCCGATGCAGGTGAGCGCCAGCTACTATGGCGCCGCGGAGCTCGACCGCGCGACGCATAACCACAAGCTCGTCAAGGGAGACGACATCGAGgtgggttcgcatttgcactgtgtttagataaacaaaagctttattgaactcaacgaattacattaagatgatgatagaattgtaccgataacaacttttgattgtgatttggcgatgatttcagagagaaattgggtttgtgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT