1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
ATCAATCCTGTGAGAACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtgttttaacttttaccaagacatcagcattcaggagatatcactttatcaccctacagactaaatggtgctgctttaaacactagttaacaa...
species | Oryza sativa |
transcript | LOC_Os01g54910.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|88561572|gb|CI492289.1|CI492289
genomic: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|87040973|gb|CI195595.1|CI195595
genomic: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|88198384|gb|CI198234.1|CI198234
genomic: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: GGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|9864965|gb|AU100715.1|AU100715
genomic: GGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TTCGAGCTCCAGGAAAGGTTGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|25806199|gb|CA762160.1|CA762160
genomic: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|218480472|gb|FG958725.1|FG958725
genomic: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TCGAGCTCCAGGAAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|88976925|gb|CI257621.1|CI257621
genomic: TCGAGCTCCAGGAAA-GGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: CTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGCCCATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|58690249|gb|CK078936.1|CK078936
genomic: CTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|87040029|gb|CI193238.1|CI193238
genomic: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: AAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|88955134|gb|CI721765.1|CI721765
genomic: AAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|29629970|gb|CB634979.1|CB634979
genomic: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|87040844|gb|CI195466.1|CI195466
genomic: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGEST: gi|88904755|gb|CI712054.1|CI712054
genomic: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
EST: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTG ATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
genomic: TTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtg ... aatcatgcagATGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAATCCTGTGAGAACTAAAGAACTTACAAACATTCGAGCTCCAGGAAAGGATGAAAATGTCAGGCTTTCTCCACCACGATTGgtatgttgtgttttaacttttaccaagacatcagcattcaggagatatcactttatcaccctacagactaaatggtgctgctttaaacactagttaacaa
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG