1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttccttgcttaaatacttattccaagagacagcaaagccaaaatagaaattgactgttactaattgattcgctattcacaacag
species | Oryza sativa |
transcript | LOC_Os01g09320.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGACTCGGCCTCGGTGTCGTAATCTCTEST: gi|29668943|gb|CB665218.1|CB665218
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|58689010|gb|CK077697.1|CK077697
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|218502213|gb|FG961004.1|FG961004
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|29640538|gb|CB645547.1|CB645547
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|58604549|gb|CK015077.1|CK015077
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|86594283|gb|CI251155.1|CI251155
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: AAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCGCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|29642463|gb|CB647470.1|CB647470
genomic: AAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|218479902|gb|FG948663.1|FG948663
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAAATGCCTACATTTTCCCCTGGATTCGGCCTCGGTGTTGTAATCTEST: gi|87040607|gb|CI195229.1|CI195229
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAA-TGCCTACATTTTCCC-TGGATTCGGCCTCGGTGTCGTAATCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|218493259|gb|FG949070.1|FG949070
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|88198812|gb|CI197209.1|CI197209
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTGGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|58671293|gb|CK059979.1|CK059979
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|29630820|gb|CB635829.1|CB635829
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|88961240|gb|CI096644.1|CI096644
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|29663066|gb|CB659341.1|CB659341
genomic: GTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|29625639|gb|CB630650.1|CB630650
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|38474181|gb|CF958313.1|CF958313
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|58673473|gb|CK062159.1|CK062159
genomic: GTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|89184779|gb|CI048335.1|CI048335
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: CGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|89197307|gb|CI052037.1|CI052037
genomic: CGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCGCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|87041398|gb|CI196020.1|CI196020
genomic: GAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTT-CCTGGANTTCGGCCTCGGTGTCGTAATCTCEST: gi|58585822|gb|CF984130.1|CF984130
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGA-TTCGGCCTCGGTGTCGTAATCTC
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|29645566|gb|CB650573.1|CB650573
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|29626361|gb|CB631372.1|CB631372
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|15858197|gb|BI811009.1|BI811009
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: TGACCCTGTGGAGTACACATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATGTTTCCCCTGGATTCGGCCTCGGTGTTGTAATCTEST: gi|87041092|gb|CI195714.1|CI195714
genomic: TGACCCTGTGGAGTACA-ATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACAT-TTT-CCCTGGATTCGGCCTCGGTGTCGTAATCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|89195350|gb|CI051463.1|CI051463
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCNTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|29681753|gb|CB678028.1|CB678028
genomic: GTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|29626362|gb|CB631373.1|CB631373
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|86518820|gb|CI159026.1|CI159026
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: CTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAAGGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|218502862|gb|FG946696.1|FG946696
genomic: CTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|88248955|gb|CI248804.1|CI248804
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: ATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|88197857|gb|CI197707.1|CI197707
genomic: ATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|58679004|gb|CK067691.1|CK067691
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|218497744|gb|FG966597.1|FG966597
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTTGTAATCTCTEST: gi|88198739|gb|CI198589.1|CI198589
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCGTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|8956808|gb|BE230611.1|BE230611
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTEST: gi|86519039|gb|CI159245.1|CI159245
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
EST: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAG TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
genomic: GTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttc ... ttcacaacagTCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCGTGCAGTATTTGCCAGCGGCAGTCCGTTTGACCCTGTGGAGTACAATGGAAAGATACATGTGCCAGGCCAGgtactgcttccttgcttaaatacttattccaagagacagcaaagccaaaatagaaattgactgttactaattgattcgctattcacaacag
- - - - - - - - - - - - - - - - - - - GTGGAG