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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGAAGGATATGGAATGACAGAGACATCATGTATCATCTCTGCAATGAATATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTGgtaagatctgtgtttgggtttaactagacttggttggataaataacttgtccttttgttcacagtaattcctcactgttattgtttttgtacattatcacttctcacactcttccataacgcaaattctgtttctatttttcag

Basic information

species Oryza sativa
transcript LOC_Os12g04990.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g04990.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G176546_T01 (Zea mays), 5'ss of exon 7
CTCGAAGGATATGGAATGACAGAGACATCATGTATCATCTCTGCAATGAATATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTGgtaagatctgtgtttgggtttaac--------tagacttggttggataaataacttgtccttttgttcacagtaattcctcactgttattgtttttgtacattatcacttctcacactcttccataacgcaaattctgtttctatttttcag
|| ||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||| || | |||||||||||| ||||| |||| | |||||||||||||| || | ||||   ||| |         |  | ||| |||| ||    |||||  ||| |||| | | || |  |      ||    || |  || ||                                                  
CTTGAAGGCTATGGAATGACGGAGACATCCTGTATCATATCTGCAATGGATATTGGTGACAGATCAATTGGTCATGTTGGATCCCCAACTGCATCTTGTGgtaagctccgcgtttcaatttgaagggtataatgaatttgattgggtagc--acttgcacttgtgttgaaaatattgtccatgaattcaacttataatatat--------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|568356|gb|D39204.1|D39204
EST:     TATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTG                         AGATTAAACTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATGAAC
genomic: TATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTGgtaagatctg ... tatttttcagAGATTAAACTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATGAAC
EST: gi|58602340|gb|CK012868.1|CK012868
EST:     TATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTG                         AGATTAAACTAATGGATGTCCCAGAAATGAATTACACCTCTGAGGATGAAC
genomic: TATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTGgtaagatctg ... tatttttcagAGATTAAACTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATGAAC
EST: gi|58693358|gb|CK082045.1|CK082045
EST:     TATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTG                         AGATTAAACTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATGAAC
genomic: TATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTGgtaagatctg ... tatttttcagAGATTAAACTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATGAAC
EST: gi|58659745|gb|CK048425.1|CK048425
EST:     TATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTG                         AGATTAAACTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATGAAC
genomic: TATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTGgtaagatctg ... tatttttcagAGATTAAACTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATGAAC
EST: gi|313081138|gb|HO213724.1|HO213724
EST:     TATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTG                         AGATTAAACTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATGAAC
genomic: TATTGGTGATAGGTTAATTGGTCATGTCGGATCTCCAAATCCATCTTGTGgtaagatctg ... tatttttcagAGATTAAACTAGTGGATGTCCCAGAAATGAATTACACCTCTGAGGATGAAC