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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTCATCTAATTAGCTTCAGACCTTCTGCTAGAAATATACCACTACAAGCATCGATGACTGTAACAGACGgtcagtatttcctaaccgaaccactgtttgttatagtaggacgagttggtacttcaatggtagtccgtcttgctgcaatgatcgatgtaaagttcaaattgcacaatcttttcttgcag

Basic information

species Oryza sativa
transcript LOC_Os11g33330.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g33330.1 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G169095_T01 (Zea mays), 5'ss of exon 14
GTCCTCATCTAATTAGCTTCAGACCTTCTGCTAGAAATATACCACTACAAGCATCGATGACTGTAACAGACGgtcagtattt-cctaaccgaaccactgttt--gttata-gtaggacgagttggtac-----ttcaatggtagtccg--tcttgctgcaatgatcgatg-----taaagttcaaattgcacaatcttttcttgcag
|||||||||||||||||||||||||||||||| ||||| |||| || |||||||| |||||||| ||||| ||||||||  |  |||||   |    | |||   ||||  || |   || ||| |       ||| ||  ||  ||   | ||| |    | ||  | |     || ||      ||||| |||||||  ||| ||
GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGCATCAATGACTGTGACAGATGgtcagtagatatctaacttcagtttttttttaattatttgtggtttgatttgatgtcaagtttctatcatatgccaaatgttgatattcttataaaagatttttacagactctgttgcataatctttctttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38475630|gb|CF959763.1|CF959763
EST:     ACCTTCTGCTAGAAATGTACCACTACAAGCATCGATGACTGTAACAGACG                         AACCTGGTTACTATGAAGATGGAAGCTTTGGTATAAGATTGGAGAATGTTC
genomic: ACCTTCTGCTAGAAATATACCACTACAAGCATCGATGACTGTAACAGACGgtcagtattt ... tttcttgcagAACCTGGTTACTATGAAGATGGAAGCTTTGGTATAAGATTGGAGAATGTTC