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GTTGCCCCCGTCGTCAACTCCAGCAGCCCACAAGTCAGTTCTTGTGGGTGATTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttcattttcaaatatgttagtactgtataatattaagttcttggatatactggcccttcacgtttcagtgttgagagagagagagagagagag...
species | Oryza sativa |
transcript | LOC_Os09g39590.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAG GTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGCEST: gi|88829475|gb|CI074345.1|CI074345
genomic: TTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttc ... tttcttgcagGTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGC
EST: ATTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAG GTTGAATTTGCTGGTGGTGCTATACGGTGTGGTGAATACATCACACTGCGCEST: gi|88527394|gb|CI455552.1|CI455552
genomic: ATTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttc ... tttcttgcagGTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGC
EST: ATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAG GTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGCEST: gi|88535348|gb|CI464143.1|CI464143
genomic: ATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttc ... tttcttgcagGTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGC
EST: CAATTCCTGGCAAATAAAGGTTTGCAG GTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGCEST: gi|88531680|gb|CI460090.1|CI460090
genomic: CAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttc ... tttcttgcagGTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGC
EST: TTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAG GTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGCEST: gi|88964230|gb|CI045423.1|CI045423
genomic: TTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttc ... tttcttgcagGTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGC
EST: ATTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAG GTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGCEST: gi|29672566|gb|CB668841.1|CB668841
genomic: ATTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttc ... tttcttgcagGTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGC
EST: ATTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAG GTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGCEST: gi|88560284|gb|CI490933.1|CI490933
genomic: ATTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttc ... tttcttgcagGTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGC
EST: CAATTCCTGGCAAATAAAGGTTTGCAG GTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGC
genomic: CAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttc ... tttcttgcagGTTGAATTTGCTGGTGGTGCTTTACGGTGTGGTGAATACATCACACTGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCCCCCGTCGTCAACTCCAGCAGCCCACAAGTCAGTTCTTGTGGGTGATTTGAAATTGGCTGATTTTAAGCAATTCCTGGCAAATAAAGGTTTGCAGgtaagttttcattttcaaatatgttagtactgtataatattaagttcttggatatactggcccttcacgtttcagtgttgagagagagagagagagagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA