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GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctttttcttatgttacatgatatgaggcacattaatttttttgtcatatcatgtttgcataaaaatgtttctttcaattaagaaactcatgagcatcaagtagatttactagactagttaagataaacaaatactgaacatgcag
species | Oryza sativa |
transcript | LOC_Os09g06499.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|86491278|gb|CI133911.1|CI133911
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|58680269|gb|CK068956.1|CK068956
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|29643061|gb|CB648068.1|CB648068
genomic: CGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|29614649|gb|CB619662.1|CB619662
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|87007390|gb|CI279061.1|CI279061
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|29661764|gb|CB658039.1|CB658039
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|29661763|gb|CB658038.1|CB658038
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATNEST: gi|29674507|gb|CB670782.1|CB670782
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTAT-
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|88963699|gb|CI029474.1|CI029474
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|29613615|gb|CB618628.1|CB618628
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|86900178|gb|CI300201.1|CI300201
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAEST: gi|22304910|gb|BQ906132.1|BQ906132
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCA
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|29630278|gb|CB635287.1|CB635287
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATCEST: gi|86592891|gb|CI270448.1|CI270448
genomic: CCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
EST: ATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCGC CTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
genomic: ATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctt ... gaacatgcagCTGTTACATACATCGATTCAAGTGCTGTTCAGGCTCTCAAGGACTTGTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCGTGAATATGAGCTTAATCTCCCAAATTCAAACCGTGGACCTGATGTCGGAAGAGTGTACTTTGTGATCCTCGAGATGTCCCgtaagatctttttcttatgttacatgatatgaggcacattaatttttttgtcatatcatgtttgcataaaaatgtttctttcaattaagaaactcatgagcatcaagtagatttactagactagttaagataaacaaatactgaacatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG