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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAgtaatgatcactcgaccacagattttgccttccatttttaagcaggtagactcttaaaaaacattcaagttatttttctaactttgattttcag

Basic information

species Oryza sativa
transcript LOC_Os08g32630.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32630.2 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM5G851815_T01 (Zea mays), 5'ss of exon 14
GATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAgtaatgatcactcgaccacagattttgccttccatttttaagcaggtagactcttaaaaaacattcaagttatttttctaactttgattttcag-----------------------
||||||||||| ||||||||||| || |||||| |||| ||||||||||||||| ||||||| ||||| |||||||| ||||||||||||| || || ||||    |||  || |  |         |  | | ||                       
GATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAGgtaggcttttgaaaaggcatcattttctcatgaggctgaagtctgttagtaatttattctgtttcctcctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29642655|gb|CB647662.1|CB647662
EST:     GATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTA                         AAACTTCAGATAAGCTATGCTGGTCAATGGATTTTATCTCCATCTCTTCTT
genomic: GATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAgtaatgatca ... tgattttcagAAACTTCAGATAAGCTATGCTGGTCAATGGATTTTATCTCCATCTCTTCTT