Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGgtagactcttaaaaaacattcaagttatttttctaactttgattttcagaaacttcagataagctatgctggtcaatggattttatctccatctcttcttgctttag

Basic information

species Oryza sativa
transcript LOC_Os08g32630.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32630.5 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM5G851815_T01 (Zea mays), 5'ss of exon 14
GATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGgtagactcttaaaaaacattcaagttatttttctaactttgattttcagaaacttcagataagctatgctggtcaatggattttatctccatctcttcttgctttag
||||||||||| ||||||||||| || |||||| |||| ||||||||||||||| ||||||| ||||| |||||||| ||||||||||||| || || ||||    |||  || |  |         |  | | || || ||    |      | || |                                   
GATGTAATACAGTTTGGACCTCTTGTGAAAACTTTGGGGCTAGTAATGATCACTAGACCACAAATTTTACCTTCCATATTTAAGCAGgtaggcttttgaaaaggcatcattttctcatgaggctgaagtctgttagtaatttattctgtttcctcctag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29670150|gb|CB666425.1|CB666425
EST:     GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTTAGCAG                         GCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGG
genomic: GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGgtagactctt ... cttgctttagGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
EST: gi|29670151|gb|CB666426.1|CB666426
EST:     GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAG                         GCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
genomic: GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGgtagactctt ... cttgctttagGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
EST: gi|22305644|gb|BQ906866.1|BQ906866
EST:     TCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTGTTTAAGCAG                         GCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCACTTTTGTGATGCTTG
genomic: TCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATT-TTTAAGCAGgtagactctt ... cttgctttagGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCA-TTTTGTGATGCTTG
EST: gi|29677474|gb|CB673749.1|CB673749
EST:     GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAG                         GCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
genomic: GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGgtagactctt ... cttgctttagGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
EST: gi|88244952|gb|CI244801.1|CI244801
EST:     GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAG                         GCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
genomic: GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGgtagactctt ... cttgctttagGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
EST: gi|88847633|gb|CI018324.1|CI018324
EST:     GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAG                         GCTGGACCTGGGGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
genomic: GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGgtagactctt ... cttgctttagGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
EST: gi|88245161|gb|CI245010.1|CI245010
EST:     GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAG                         GCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
genomic: GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGgtagactctt ... cttgctttagGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
EST: gi|88841109|gb|CI001071.1|CI001071
EST:     GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAG                         GCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
genomic: GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGgtagactctt ... cttgctttagGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
EST: gi|29679962|gb|CB676237.1|CB676237
EST:     GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAG                         GCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT
genomic: GTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATTTTTAAGCAGgtagactctt ... cttgctttagGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGT