1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
ATCAATGAAGGTGATGGTGCCTTCTATGGTCCAAAAATTGATATTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAGgttatattgaatgtcattttgtttttaattgtagacagaatagaaggttatttatctaaacttcatttcctgttacag
species | Oryza sativa |
transcript | LOC_Os08g19850.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAG CTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGATEST: gi|8956844|gb|BE230647.1|BE230647
genomic: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAGgttatattga ... cctgttacagCTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGAT
EST: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAG CTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGATEST: gi|33794572|gb|CF323173.1|CF323173
genomic: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAGgttatattga ... cctgttacagCTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGAT
EST: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAG CTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGATEST: gi|29626606|gb|CB631617.1|CB631617
genomic: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAGgttatattga ... cctgttacagCTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGAT
EST: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAG CTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGATEST: gi|38479117|gb|CF963250.1|CF963250
genomic: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAGgttatattga ... cctgttacagCTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGAT
EST: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACGG GTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGATEST: gi|29622569|gb|CB627580.1|CB627580
genomic: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAGgttatattga ... cctgttacagCTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGAT
EST: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAG CTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGATEST: gi|8956784|gb|BE230587.1|BE230587
genomic: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAGgttatattga ... cctgttacagCTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGAT
EST: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAG CTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGAT
genomic: TTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAGgttatattga ... cctgttacagCTCGATTTTCAGCTGCCCCTACGCTTCAAGCTGACTTACTCTGCAGAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAATGAAGGTGATGGTGCCTTCTATGGTCCAAAAATTGATATTGGTGTGTTTGATGCCCTCAAGAGGAAATTTCAGTGTGCAACTCTACAGgttatattgaatgtcattttgtttttaattgtagacagaatagaaggttatttatctaaacttcatttcctgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA