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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTTTGGTCGGGTGAATGATAAAAACAAAGAGGCTCTGAAGATAGCGAAGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatttgtgttattatagggcgacatttactttcaggcactgcctctttcaagttttaactctgagaaatacag

Basic information

species Oryza sativa
transcript LOC_Os07g47530.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47530.1 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G157621_T02 (Zea mays), 5'ss of exon 15
TAGCTTTGGTCGGGTGAATGATAAAAACAAAGAGGCTCTGAAGATAGCGAAGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt-tgt--gttattatagggcgacatt-tactt---tcaggcactgcctctttcaagttttaactctgagaa-atacag---
|||||||||||||| |  ||| ||||| ||||| || || |||||  | |||||| | |||||||| ||||||||||||||||||||  || ||||  |||||||||||| |||  ||| | |   ||  | ||  ||  |   ||  | | || || || |||||||||||||| | || || |     
TAGCTTTGGTCGGGCGGGTGAAAAAAATAAAGAAGCACTCAAGATGTCAAAGCATATAACTAAACTTTTCCCAAATAAAGTGACAATTGAATCACCTGAGgtgtgtcattatgttagttctcaagagggtatataatatatagatctagaattggcttttgcaagttttaactcttaaaatatgctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33797016|gb|CF324371.1|CF324371
EST:     AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
EST: gi|58692536|gb|CK081223.1|CK081223
EST:     AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
EST: gi|58690470|gb|CK079157.1|CK079157
EST:     AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
EST: gi|58652949|gb|CK041629.1|CK041629
EST:     AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
EST: gi|58690512|gb|CK079199.1|CK079199
EST:     AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
EST: gi|33675839|gb|CF304078.1|CF304078
EST:     AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
EST: gi|58658063|gb|CK046743.1|CK046743
EST:     AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
EST: gi|33675419|gb|CF303658.1|CF303658
EST:     AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
EST: gi|29685521|gb|CB681796.1|CB681796
EST:     AGCATCTGACTAGACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTC
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTC
EST: gi|58660377|gb|CK049057.1|CK049057
EST:     AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
EST: gi|33676430|gb|CF304669.1|CF304669
EST:     AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAG                         GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA
genomic: AGCATCTGACTAAACTCTTCCCAAATAAAGTGACAATACAAACACCGCAGgtgtgtcatt ... agaaatacagGATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAA