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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAAAAGGGTAATGCTCGTGAAAGACATGTTATCAGCAAACATGAAAAGGAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAGgtattgcaagtttggttttagttttgttttgtactcgggaaacttttctgtccatttcttgtaacgcttcttaacagattcttttttttttatcctag

Basic information

species Oryza sativa
transcript LOC_Os07g32400.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87020794|gb|CI269511.1|CI269511
EST:     GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAG                         TGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
genomic: GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAGgtattgcaag ... tttatcctagTGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
EST: gi|33678909|gb|CF307148.1|CF307148
EST:     GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAG                         TGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
genomic: GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAGgtattgcaag ... tttatcctagTGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
EST: gi|87032664|gb|CI270299.1|CI270299
EST:     GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAG                         TGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
genomic: GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAGgtattgcaag ... tttatcctagTGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
EST: gi|88228909|gb|CI226760.1|CI226760
EST:     CCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAG                         TGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
genomic: CCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAGgtattgcaag ... tttatcctagTGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
EST: gi|29661925|gb|CB658200.1|CB658200
EST:     GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAG                         TGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
genomic: GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAGgtattgcaag ... tttatcctagTGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
EST: gi|86528838|gb|CI169044.1|CI169044
EST:     GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAG                         TGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
genomic: GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAGgtattgcaag ... tttatcctagTGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
EST: gi|88236841|gb|CI234692.1|CI234692
EST:     GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAG                         TGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG
genomic: GAATCACATGAACCCAGAATTTCGGCAGTAAACAGTCATGATGCCCCAAGgtattgcaag ... tttatcctagTGAGAATGCTGACATGGAAAAAGGTCGCAAACCACGCCAGATACATGATGG