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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGAGTTTCAGGATATGGTGGCTGGTTCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctccctttgccctatctgaaatcccaagccttccaatcatccatttaactgacatgtgaacatgtgcatgcacag

Basic information

species Oryza sativa
transcript LOC_Os07g26610.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g26610.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G069676_T01 (Zea mays), 5'ss of exon 1
----------------------GTAAGAGTTTCAGGATATGGTGGCTGGTTCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctccctttgccctatctgaaatcccaagccttccaatcatccatttaactgacatgtgaacatgtgcatgc-acag
                      ||||| ||||||||||||||||| ||||||||  || || | || || ||||| || ||||||||||| ||||| |||||     || |||  |    |||     | ||| |||    |  |  |||||    | |||||||   || |||||| ||||
TTTTATGGCATACCATACACAGGTAAGGGTTTCAGGATATGGTGGGTGGTTCTTGCTGAGGCTCTCTCTGCATGATCCTGTTCTTCCCCTAAACATTGAGgtag--ttctcttcacttcctct-----ctcaatcctaatga--aggcatttcggagtcatgtga-tgtgcgcatgctacag

upper sequence: LOC_Os07g26610.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G069676_T02 (Zea mays), 5'ss of exon 16
GTAAGAGTTTCAGGATATGGTGGCTGGTTCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctccctttgccctatctgaaatcccaagccttccaatcatccatttaactgacatgtgaacatgtgcatgc-acag
||||| ||||||||||||||||| ||||||||  || || | || || ||||| || ||||||||||| ||||| |||||     || |||  |    |||     | ||| |||    |  |  |||||    | |||||||   || |||||| ||||
GTAAGGGTTTCAGGATATGGTGGGTGGTTCTTGCTGAGGCTCTCTCTGCATGATCCTGTTCTTCCCCTAAACATTGAGgtag--ttctcttcacttcctct-----ctcaatcctaatga--aggcatttcggagtcatgtga-tgtgcgcatgctacag

upper sequence: LOC_Os07g26610.1 (Oryza sativa), 5'ss of exon 17
lower sequence: AT5G17530.1 (Arabidopsis thaliana), 5'ss of exon 18
GTAAGAGTTTCAGGATATGGTGGCTGGTTCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctccctttgc--cctatctgaaatcccaagccttccaatcatccatttaactga-catgtgaacatgtgcatgcacag
 |  | ||||| || | |||||| |||||  |  |  |  | || |||||||| || ||||||||||||||||||||||| | | |   | |    | || || |  | |  ||  |   ||   ||  |  || |   ||  || ||              
ATCCGCGTTTCGGGCTTTGGTGGATGGTTTCTTCTCAGACTTTCTCTCCATGATCCTGTTCTTCCCCTTAACATCGAGgtaaacatatgtataaagcttaacttagtttc--agtatctaaactttcactcgaatttttcaattggacgcag----------

upper sequence: LOC_Os07g26610.1 (Oryza sativa), 5'ss of exon 17
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 5'ss of exon 17
GTAAGAGTTTCAGGATATGGTGGCTGGTTCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctccctttgccctatctgaaatcccaagccttccaatcatccatttaactgacatgtgaacatgtgca-tgcacag
||  ||| ||| || | ||| || |||||| |  |  |  | ||||| |||||||| ||||||||||||||||| |||||      ||||||     |  ||  |    |||  ||  ||| | |   |    ||   ||  || ||| | | | || ||
GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAGgtataatccccttt----caagtgtcacgttaag--ttataattaccagatattttgcactgacaatatgagaactccatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89183519|gb|CI046084.1|CI046084
EST:     TCTTATTGCGGTTATCCCTCCATGACGCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|86869806|gb|CI316534.1|CI316534
EST:     TCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGC
genomic: TCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAA-GGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGC
EST: gi|86831683|gb|CI301533.1|CI301533
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|86259591|gb|CI065464.1|CI065464
EST:     TCTTATTGCGTTTATCCCTCCATGACCCAGTTCTTCCCCTNAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|218504169|gb|FG954519.1|FG954519
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|88268519|gb|CI378454.1|CI378454
EST:     TCTTATTGCGGTTATCCCTCCATGACCCACTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|88262692|gb|CI366466.1|CI366466
EST:     TCTTAGTGCGGTTATCCCTCCA-GACCCAGTTCTTCCCCTTAACATCGAG                         TCGCCGAGCAAGGATGATGCCATTAATCTTGGGCTTGCAGTGCTGACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|89177577|gb|CI390756.1|CI390756
EST:     GCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: GCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|88463145|gb|CI524455.1|CI524455
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|86594297|gb|CI251169.1|CI251169
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|86844097|gb|CI336754.1|CI336754
EST:     TCTTATTGCGGTTATCCCTCCATGACCCACTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTT-GGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|87008287|gb|CI301045.1|CI301045
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|29660679|gb|CB656954.1|CB656954
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|88250179|gb|CI250456.1|CI250456
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|89186475|gb|CI048147.1|CI048147
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|86426061|gb|CI071158.1|CI071158
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTGAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|88838627|gb|CI376165.1|CI376165
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|88845405|gb|CI084330.1|CI084330
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTGAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|88828531|gb|CI073401.1|CI073401
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTGAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|88254849|gb|CI351477.1|CI351477
EST:     TTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTT-CAGTGCTTACTGCC
genomic: TTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|86892585|gb|CI312008.1|CI312008
EST:     TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TCTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|89172967|gb|CI040860.1|CI040860
EST:     TATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAG                         GCGCCGAGCAAGGATGATGCCCTTAAGCTTGGGCTTGCAGTGCTTACTGCC
genomic: TATCCCTCCATGACCCAGTTCTTCCCCTTAACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGCC
EST: gi|86258642|gb|CI064995.1|CI064995
EST:     CTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCT-ANACATCGAG                         GCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGC
genomic: CTTATTGCGGTTATCCCTCCATGACCCAGTTCTTCCCCTTA-ACATCGAGgtcagcctcc ... gcatgcacagGCGCCGAGCAAGGATGATGCCATTAAGCTTGGGCTTGCAGTGCTTACTGC