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GTCTTACAAGTCCTGAGTATCCAGCAGCAATTTTGGCCAGTTTTAGTTCCATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgacaaaagtgcaatcaacattgccactaattaaactagatatattaagatattgatcagtagcttatttattgtggatacaaggattagaataa...
species | Oryza sativa |
transcript | LOC_Os07g06980.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA GCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88836451|gb|CI078348.1|CI078348
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88908189|gb|CI090784.1|CI090784
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88464129|gb|CI509613.1|CI509613
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: GGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88379281|gb|CI508799.1|CI508799
genomic: GGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88374012|gb|CI510830.1|CI510830
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATNCAGGAGGGGCAGGACCCTEST: gi|88253934|gb|CI352560.1|CI352560
genomic: TTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTACAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88318764|gb|CI508360.1|CI508360
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88563232|gb|CI493949.1|CI493949
genomic: TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|86498642|gb|CI141275.1|CI141275
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88849201|gb|CI087723.1|CI087723
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCGGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGGAAAAGGAAGCATGCAGGAGGGGCAGGACCCEST: gi|88562711|gb|CI493428.1|CI493428
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGAT-GAAAAGGAAGCATGCAGGAGGGGCAGGACCC
EST: GCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88564989|gb|CI495706.1|CI495706
genomic: GCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: CTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|58681037|gb|CK069724.1|CK069724
genomic: CTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|89183692|gb|CI046257.1|CI046257
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|86868864|gb|CI334236.1|CI334236
genomic: TCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: GGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAGGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|86426424|gb|CI071521.1|CI071521
genomic: GGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGNNNNNNNCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88565171|gb|CI495888.1|CI495888
genomic: TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGG-TTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: CACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|86874298|gb|CI335910.1|CI335910
genomic: CACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TGGCAGTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGTCAGGACCCTEST: gi|88294040|gb|CI510348.1|CI510348
genomic: TGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88561850|gb|CI492567.1|CI492567
genomic: TTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88265021|gb|CI368795.1|CI368795
genomic: TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88523857|gb|CI451719.1|CI451719
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: CAGTTCTGGCACTGCAGCGGTCGGNNNNNNNCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|58681336|gb|CK070023.1|CK070023
genomic: CAGTTCTGGCACTGCAGCGGTCGG-TTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88318994|gb|CI510789.1|CI510789
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: GTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88262774|gb|CI366548.1|CI366548
genomic: GTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TTTTCCAGATATA CCACTGAA-TAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCA-GACCCTEST: gi|29644494|gb|CB649501.1|CB649501
genomic: TTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|86415170|gb|CI069573.1|CI069573
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|86881379|gb|CI322516.1|CI322516
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCACCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88845329|gb|CI084254.1|CI084254
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGNNNNNNNCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88539932|gb|CI469930.1|CI469930
genomic: TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGG-TTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: AGTTCTGGCACTGCAGCGGTCGGNNNNNNNCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|89194187|gb|CI116624.1|CI116624
genomic: AGTTCTGGCACTGCAGCGGTCGG-TTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88272674|gb|CI386529.1|CI386529
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGNNNNNNNCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88562524|gb|CI493241.1|CI493241
genomic: TCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGG-TTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TGGCACTGCAGCGGTCGGTTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|88546533|gb|CI476181.1|CI476181
genomic: TGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: TTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCTEST: gi|86877970|gb|CI320774.1|CI320774
genomic: TTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
EST: ATCCTGGGCATCAGTTCTGGCACTGCAGC-GTCGGGTTTTTCCAGATATA CCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
genomic: ATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgaca ... cgatgtgtagCCACTGAAGTAAACAAGATGAAAAGGAAGCATGCAGGAGGGGCAGGACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTACAAGTCCTGAGTATCCAGCAGCAATTTTGGCCAGTTTTAGTTCCATCCTTTGCATCAGTTCTGGCACTGCAGCGGTCGGTTTTTTCCAGATATAgtgagtgacaaaagtgcaatcaacattgccactaattaaactagatatattaagatattgatcagtagcttatttattgtggatacaaggattagaataa
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