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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTTGGTAAAGATGCACTGGCAGAATCTGATAAGATTACATTGGAAACAGCCAAGCTACTAAGGGAAGATTACTTGGCACAGAATGCATTTACCCCgtgagtcataccctagttttttctgatttaatacagatttattggttgtctctattttaatgattaaccattttctttagtctgatcatctctatataatgaaacag

Basic information

species Oryza sativa
transcript LOC_Os06g45120.2
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33804193|gb|CF327971.1|CF327971
EST:     ACAGCCAAGCTACTAAGGGAAGATTACTTGGCACAGAATGCATTTACCCC                         ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGTGCAACAT
genomic: ACAGCCAAGCTACTAAGGGAAGATTACTTGGCACAGAATGCATTTACCCCgtgagtcata ... aatgaaacagATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACAT
EST: gi|116875037|gb|EC365545.1|EC365545
EST:     ACAGCCAAGCTACTAAGGGAAGATTACTTGGCACAGAATGCATCTACCCC                         ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACAT
genomic: ACAGCCAAGCTACTAAGGGAAGATTACTTGGCACAGAATGCATTTACCCCgtgagtcata ... aatgaaacagATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACAT
EST: gi|88735905|gb|CI757480.1|CI757480
EST:     ACAGCCAAGCTACTAAGGGAAGATTACTTGGCACAGAATGCATTTACCCC                         ATATGACAAGTTCTGTC
genomic: ACAGCCAAGCTACTAAGGGAAGATTACTTGGCACAGAATGCATTTACCCCgtgagtcata ... aatgaaacagATATGACAAGTTCTGTC
EST: gi|116875538|gb|EC366046.1|EC366046
EST:     ACAGCCAAGCTACTAAGGGAAGATTACTTGGCACAGAATGCATCTACCCC                         ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACAT
genomic: ACAGCCAAGCTACTAAGGGAAGATTACTTGGCACAGAATGCATTTACCCCgtgagtcata ... aatgaaacagATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGTTGGTAAAGATGCACTGGCAGAATCTGATAAGATTACATTGGAAACAGCCAAGCTACTAAGGGAAGATTACTTGGCACAGAATGCATTTACCCCgtgagtcataccctagttttttctgatttaatacagatttattggttgtctctattttaatgattaaccattttctttagtctgatcatctctatataatgaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA