1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctcctcggaacttactgaactgccctatgctgttactagtacttctgttcaaatattcatgtattacttatacacag
species | Oryza sativa |
transcript | LOC_Os06g02620.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|86525359|gb|CI165565.1|CI165565
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|218486942|gb|FG960669.1|FG960669
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|38477689|gb|CF961822.1|CF961822
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGEST: gi|88243653|gb|CI244050.1|CI244050
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGG
EST: CCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|88832398|gb|CI019339.1|CI019339
genomic: CCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|109712340|gb|CI104948.1|CI104948
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|88269750|gb|CI381048.1|CI381048
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: CATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|88224010|gb|CI223859.1|CI223859
genomic: CATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|29614537|gb|CB619550.1|CB619550
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGG GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|87018983|gb|CI256868.1|CI256868
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|88274169|gb|CI394575.1|CI394575
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: CAGTATTTCCACTTCAATGTCAACATCCCTTC GAATTTGACACCGAGACAGCGCGTGCCTGATCGAGGAATTTGCGAAGGAAGEST: gi|86846261|gb|CI339852.1|CI339852
genomic: CAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTG-CTGATCGAGGAATTTGCGAAGGAAG
EST: CAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|22304698|gb|BQ905920.1|BQ905920
genomic: CAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACA--GCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|88907776|gb|CI091174.1|CI091174
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGAEST: gi|86488478|gb|CI131111.1|CI131111
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
EST: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGC GAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
genomic: TCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctc ... ttatacacagGAATTTGACACCGAGACAGCGCGTGCTGATCGAGGAATTTGCGAAGGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCAAGACGAGAAATTCATCGTACTATGGAGATCAGTATGTCCACTTCAATGTCAACATCCCTGCgtaagctctcctcggaacttactgaactgccctatgctgttactagtacttctgttcaaatattcatgtattacttatacacag
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - AGATCA