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CTGTTATTTATAGCAGCAACAAGAAGTTGCTGTATAGCAATGTCAATTTGAAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAGgtctcttcatctctgatatgcatcagttctttgtgcatcttcttgattttacactgatatgaattatgtacagagtgttttatatctttggacaaatgtt...
species | Oryza sativa |
transcript | LOC_Os05g51480.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAG CCTTGCAATTGCTAAAGAAGGTGAACTCTCAATTGGAACCATCGATGACATEST: gi|58691637|gb|CK080324.1|CK080324
genomic: AAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAGgtctcttcat ... tatcttgcagCCTTGCAATTGCTAAAGAAGGTGAACTCTCAATTGGAACCATCGATGACAT
EST: AAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAG CCTTGCAATTGCTAAAGAAGGTGAACTCTCAATTGGAACCATCGATGACATEST: gi|700847|gb|D47138.1|D47138
genomic: AAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAGgtctcttcat ... tatcttgcagCCTTGCAATTGCTAAAGAAGGTGAACTCTCAATTGGAACCATCGATGACAT
EST: AAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAG CCTTGCAATTGCTAAAGAAGGTGAACTCTCAATTGGGACCATCGATGACATEST: gi|700824|gb|D47115.1|D47115
genomic: AAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAGgtctcttcat ... tatcttgcagCCTTGCAATTGCTAAAGAAGGTGAACTCTCAATTGGAACCATCGATGACAT
EST: AAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAG CCTTGCAATTGCTAAAGAAGGTGAACTCTCAATTGGAACCATCGATGACATEST: gi|58592127|gb|CF990435.1|CF990435
genomic: AAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAGgtctcttcat ... tatcttgcagCCTTGCAATTGCTAAAGAAGGTGAACTCTCAATTGGAACCATCGATGACAT
EST: AAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAG CCTTGCAATTGCTAAAGAAGGTGAACTCTCAATTGGAACCATCGATGACAT
genomic: AAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAGgtctcttcat ... tatcttgcagCCTTGCAATTGCTAAAGAAGGTGAACTCTCAATTGGAACCATCGATGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTTATTTATAGCAGCAACAAGAAGTTGCTGTATAGCAATGTCAATTTGAAGGAAGTCAACCATATGTGTCCTTTTAATACAGCTGCTATTCCTGACAGgtctcttcatctctgatatgcatcagttctttgtgcatcttcttgattttacactgatatgaattatgtacagagtgttttatatctttggacaaatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT