1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GCTCGAATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAGgtaccttaacctgaatgccatcaatcttgtcgtgcttaaatttagaacttttagccttctccaggttcatccattgtagcatgatatacaaccaattcat...
species | Oryza sativa |
transcript | LOC_Os05g46270.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAG GACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGAEST: gi|88323977|gb|CI561386.1|CI561386
genomic: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAGgtaccttaac ... ataatggcagGACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGA
EST: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAG GACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGAEST: gi|88842373|gb|CI081629.1|CI081629
genomic: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAGgtaccttaac ... ataatggcagGACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGA
EST: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAG GACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGAEST: gi|88464247|gb|CI532182.1|CI532182
genomic: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAGgtaccttaac ... ataatggcagGACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGA
EST: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAG GACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGAEST: gi|86426447|gb|CI071544.1|CI071544
genomic: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAGgtaccttaac ... ataatggcagGACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGA
EST: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAG GACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGAEST: gi|88304685|gb|CI520540.1|CI520540
genomic: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAGgtaccttaac ... ataatggcagGACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGA
EST: CCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAG GACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGAEST: gi|88467487|gb|CI537129.1|CI537129
genomic: CCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAGgtaccttaac ... ataatggcagGACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGA
EST: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTCCCTCTGAAAAGAAAG GACACTTCAGGAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGA
genomic: AATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAGgtaccttaac ... ataatggcagGACACTTCAGAAAAACCAACCAAAGCAGTCGCTAACAAGAAAACAAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGAATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGAAAGgtaccttaacctgaatgccatcaatcttgtcgtgcttaaatttagaacttttagccttctccaggttcatccattgtagcatgatatacaaccaattcat
- - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcc