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GATATGTCTATTGAACTGAGTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAGgtgagtgttttgcaaaaaaaaaaaagttttgggctataattgaggaaactccaaactatgcatatgcatatgcatagtgcaccaatacgttggatttgta...
species | Oryza sativa |
transcript | LOC_Os05g43560.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTGCTTACCATTATGGATTTGTGATGGAG GTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGEST: gi|88261850|gb|CI365426.1|CI365426
genomic: TTGCTTACCATTATGGATTTGTGATGGAGgtgagtgttt ... tggttttcagGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
EST: GATTT-TGAT-GAG GTTGAG-AAATGATAGATACCACATACACTGCAAATATTAAATCAATGATGEST: gi|58690350|gb|CK079037.1|CK079037
genomic: GATTTGTGATGGAGgtgagtgttt ... tggttttcagGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
EST: GTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAG GTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGEST: gi|88221933|gb|CI221889.1|CI221889
genomic: GTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAGgtgagtgttt ... tggttttcagGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
EST: GTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAG GTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGEST: gi|86260924|gb|CI066599.1|CI066599
genomic: GTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAGgtgagtgttt ... tggttttcagGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
EST: AGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAG GTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGEST: gi|88830844|gb|CI079278.1|CI079278
genomic: AGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAGgtgagtgttt ... tggttttcagGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
EST: ATTATGGATTTGTGATGGAG GTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGEST: gi|33683327|gb|CF311566.1|CF311566
genomic: ATTATGGATTTGTGATGGAGgtgagtgttt ... tggttttcagGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
EST: GTTCGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAG GTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGEST: gi|88247112|gb|CI246961.1|CI246961
genomic: GTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAGgtgagtgttt ... tggttttcagGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
EST: GTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAG GTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGEST: gi|88908200|gb|CI090795.1|CI090795
genomic: GTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAGgtgagtgttt ... tggttttcagGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
EST: TACCATTATGGATTTGTGATGGAG GTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATGEST: gi|29633653|gb|CB638662.1|CB638662
genomic: TACCATTATGGATTTGTGATGGAGgtgagtgttt ... tggttttcagGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
EST: GTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAG GTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
genomic: GTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAGgtgagtgttt ... tggttttcagGTGGAGAAAATGATAGATACCACATACACTGCAAATATGAAATCAATGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATATGTCTATTGAACTGAGTTTGGAAGATGTGAAAAGAGTTGCTTACCATTATGGATTTGTGATGGAGgtgagtgttttgcaaaaaaaaaaaagttttgggctataattgaggaaactccaaactatgcatatgcatatgcatagtgcaccaatacgttggatttgta
- - - - - - - - - - - TGGAAG
- - - - - - - - - - - GGAAGA
- - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa