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TGCTCATACAGATTGTATCGTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAGgtatgtttaaacattaattcccttattacttaatggttacattatttgttccctattgatgcacaattattttcctgtcaacttatgatgaacggatgtttaactaatgttctgttctacttctcaatttgaacag
species | Oryza sativa |
transcript | LOC_Os05g38150.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAG TGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTTEST: gi|89187311|gb|CI047378.1|CI047378
genomic: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAGgtatgtttaa ... atttgaacagTGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTT
EST: GTCACTACAGATGATAAGTTAGCAGAGACTTTTCTACGCAGAGTTGATAG TGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTTEST: gi|86431434|gb|CI085045.1|CI085045
genomic: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAGgtatgtttaa ... atttgaacagTGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTT
EST: GCAGAGTTGATAG TGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTTEST: gi|66915778|gb|CX102626.1|CX102626
genomic: GCAGAGTTGATAGgtatgtttaa ... atttgaacagTGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTT
EST: GTCACTACAGATGAT-AGGTAGCAGAGACTTTTCTACGCAGAGTTGATAG TGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTTEST: gi|25798187|gb|CA754084.1|CA754084
genomic: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAGgtatgtttaa ... atttgaacagTGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTT
EST: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAG TGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTTEST: gi|88262625|gb|CI366399.1|CI366399
genomic: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAGgtatgtttaa ... atttgaacagTGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTT
EST: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAG TGCTGCTGTATTTCATAATGCAACTACGAGATTCTCTTATGGGGCTCCTTTEST: gi|163917821|gb|EG712147.1|EG712147
genomic: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAGgtatgtttaa ... atttgaacagTGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTT
EST: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAG TGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTTEST: gi|89178281|gb|CI391460.1|CI391460
genomic: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAGgtatgtttaa ... atttgaacagTGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTT
EST: CAGAGACTTTTCTACGCAGAGTTGATAG TGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCCTTTEST: gi|87029670|gb|CI257465.1|CI257465
genomic: CAGAGACTTTTCTACGCAGAGTTGATAGgtatgtttaa ... atttgaacagTGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTT
EST: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAG TGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTT
genomic: GTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAGgtatgtttaa ... atttgaacagTGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCATACAGATTGTATCGTCACTACAGATGATAAGGTAGCAGAGACTTTTCTACGCAGAGTTGATAGgtatgtttaaacattaattcccttattacttaatggttacattatttgttccctattgatgcacaattattttcctgtcaacttatgatgaacggatgtttaactaatgttctgttctacttctcaatttgaacag
- - - - - - - - - - - - - CAGATG