1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GAACTATCAAACGAAGACAACGTGAAACGCTTTACTTTTAACGAAGATCTTCAGGCACGCCCTTGGTGGACACCAACAACAAGTGTTAATTTTCTGTCAGgtaattggtttctcctactatttgtgagtatcttttgtttaacagcatcctcctgaatgattgcagcacttgttggctgtttgttttttctgttcattcatgtgtttttctcagagacattacaagtgcaaaaatgcttactattgtttcattttccag
species | Oryza sativa |
transcript | LOC_Os05g27870.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TCAGGCACGCCCTTGGTGGACACCAACAACAAGTGTTAATTTTCTGTCAG AACCATTTGATGAAGGTTCTACACCTGCATGCTTTAGAGCCAAAGCGEST: gi|29677067|gb|CB673342.1|CB673342
genomic: TCAGGCACGCCCTTGGTGGACACCAACAACAAGTGTTAATTTTCTGTCAGgtaattggtt ... cattttccagAACCATTTGATGAAGGTTCTACACCTGCATGCTTTAGAGCCAAAGCG
EST: TCAGGCACGCCCTTGGTGGACACCAACAACAAGTGTTAATTTTCTGTCAG AACCATTTGATGAAGGTTCTACACCTGCATGCTTTAGAGCCAAAGCGEST: gi|11025806|gb|AU162407.1|AU162407
genomic: TCAGGCACGCCCTTGGTGGACACCAACAACAAGTGTTAATTTTCTGTCAGgtaattggtt ... cattttccagAACCATTTGATGAAGGTTCTACACCTGCATGCTTTAGAGCCAAAGCG
EST: CCCTTGGTGGACCCCCCACCACCAAGTGTNAATTTCCTGTCAG AACCATTTGATGAAGGTTCTACACCTGCATGCTTTAGAGCCAAAGCCG
genomic: CCCTTGGTGGA--CACCAACAACAAGTGTTAATTTTCTGTCAGgtaattggtt ... cattttccagAACCATTTGATGAAGGTTCTACACCTGCATGCTTTAGAGCCAAAG-CG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTATCAAACGAAGACAACGTGAAACGCTTTACTTTTAACGAAGATCTTCAGGCACGCCCTTGGTGGACACCAACAACAAGTGTTAATTTTCTGTCAGgtaattggtttctcctactatttgtgagtatcttttgtttaacagcatcctcctgaatgattgcagcacttgttggctgtttgttttttctgttcattcatgtgtttttctcagagacattacaagtgcaaaaatgcttactattgtttcattttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA