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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTTGGCTGAAGAGAGATTACTTCTGCCCAATCCACCTCTTGATCCTGAGCTTCCAGCAATTTCTATTAAGAATGGATATTTTTCATGGGAATCGCAGgtaatttcatgtttcagatatttgcctggtatctaaatatatctatgttgactatcacacattcaactctcatcattcattgatattataatataacaca...

Basic information

species Oryza sativa
transcript LOC_Os04g52900.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52900.2 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G084181_T01 (Zea mays), 5'ss of exon 16
CCTCTTGGCTGAAGAGAGATTACTTCTGCCCAATCCACCTCTTGATCCTGAGCTTCCAGCAATTTCTATTAAGAATGGATATTTTTCATGGGAATCGCAGgtaatttcatgtttcagatatttgcctggtatctaaatatatctat-gttgactatcacacattcaactctcatcattcattgatattataatataacaca-----
||| |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||| |||||||| |||||||||||||||||  |||||| ||||||||| | ||||||      ||| ||  |    ||||  || | | ||    ||       |      || ||   |||||  ||    |       
CCTGTTGGCTGAAGAGAGATTACTTCTGCCAAATCCACCTATTGATCCTGATCTTCCAGCCATTTCTATCAAGAATGGGTATTTTTCATGGGAATCAGAGgtaaattcatgttttatatatttt-----tatttatttgccactatcatttattttcttcaatcttgtaattgctgctc-ttaggattatggtagttgatttcttg

upper sequence: LOC_Os04g52900.2 (Oryza sativa), 5'ss of exon 16
lower sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 18
CCTCTTGGCTGAAGAGAGATTACTTCTGCCCAATCCACCTCTTGATCCTGAGCTTCCAGCAATTTCTATTAAGAATGGATATTTTTCATGGGAATCGCAGgtaatttc-----atgtttcagat-atttgcctggtatctaaatata---------tctatgttgactatcacacattcaactctcatcattcattgatattataatataacaca-
 ||  |   |||||||||| | ||    |  || ||||||||| | || |    |||||| ||||| |||||||||||||| ||||||||||| ||  |||| | | |     || ||||   |  ||| | |  | |   |||  |         |||    ||   |  | ||||   | ||| ||||    |   |  |  |||||  | || 
ACTTCTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTTCAACCAGGAACTCCAGCCATTTCAATTAAGAATGGATACTTTTCATGGGATTCAAAGgtgaatcctcaaaatatttcctcttgtttacattatgttggaatgcaatattagcttctgcaatgctaagtatacatgacattctgatcaca-gtgtttgctcgaatatttcccag

upper sequence: LOC_Os04g52900.2 (Oryza sativa), 5'ss of exon 16
lower sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 16
CCTCTTGGCTGAAGAGAGATTACTTCTGCCCAATCCACCTCTTGATCCTGAGCTTCCAGCAATTTCTATTAAGAATGGATATTTTTCATGGGAATCGCAGgtaatttc-----atgtttcagatatttgcctggtatctaaat---atatctatgttgactatcacacattcaac--tctcatcattcattgatattataatataacaca-
 || ||   |||||||||| | ||    |  || ||||||||  | || |    |||||| ||||| |||||||||||||||||||||||||| ||  |||| | | |     || |  |   |  ||   |  | |  | |    ||||   | |   | ||   |||    ||  ||| |||||   |   |  |  |||||    || 
ACTTTTAAGTGAAGAGAGAATTCTAGCACAAAACCCACCTCTCCAACCAGGAGCTCCAGCCATTTCCATTAAGAATGGATATTTTTCATGGGATTCAAAGgtgaatcctcaaaatatccctcttgcttagattatgttgagacgcaatattagtttatgcaattgtacacatgacattctgatcatg-gtgtttgctcgaatattttccag

upper sequence: LOC_Os04g52900.2 (Oryza sativa), 5'ss of exon 16
lower sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 16
CCTCTTGGCTGAAGAGAGATTACTTCTGCCCAATCCACCTCTTGATCCTGAGCTTCCAGCAATTTCTATTAAGAATGGATATTTTTCATGGGAATCGCAGgtaatttcatgtttcagatatttgcctggtatctaaatatatctatgttgactatcacacattcaactctcatcattcattgatattataatataacaca-----------
  |||| |||||||||||| | ||||| || |||||||||||||| ||||  |||||||| || || || ||||||||||| ||||| ||||| ||  ||||      || | | |  | ||||  ||    |         | ||  |  |   ||||||  |  ||  |  |   |         | |     |||||           
ATTCTTAGCTGAAGAGAGAATTCTTCTACCAAATCCACCTCTTGAACCTGGACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGgt----ctatatcttaactttttgtgtgcggccc-------cccatactcccccccacacacccccctgcccccgggccccagccccacacacacacacagagacatgggt