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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAATTACAAAACTATGAACAGTTGAGGAAGAAGATTGAGGGACCATCTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGgttcatattcgttttcctgacgtgaaaatgtttacattatttcctcccaaggtttcatgaaattccacgtccgaatgatttcattcttcagtttcag

Basic information

species Oryza sativa
transcript LOC_Os04g52690.3
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88902137|gb|CI374745.1|CI374745
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|29675899|gb|CB672174.1|CB672174
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAG                         TTTCAGTGTATTTGACACATGGTGGCCATGACGAAAGCATTGGCTAGTGAT
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGgttcatattc ... tcagtttcagT----GT--ATTTGACACATGGTGGCCATGACGAAAGCATTGGCTAGTGAT
EST: gi|88295326|gb|CI527689.1|CI527689
EST:     TTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: TTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|88483696|gb|CI420967.1|CI420967
EST:     TCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: TCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|88508985|gb|CI436491.1|CI436491
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|86871390|gb|CI329787.1|CI329787
EST:     TAGATGACGTCAGGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAG                         TGTATTTGACACATGGGTGGCCATGACGAAAGCATTGGCTAGTGATGAATG
genomic: TAGATGACGTCA-GTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGgttcatattc ... tcagtttcagTGTATTTGACACAT-GGTGGCCATGACGAAAGCATTGGCTAGTGATGAATG
EST: gi|88259914|gb|CI363124.1|CI363124
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|87020793|gb|CI269510.1|CI269510
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|88322088|gb|CI537671.1|CI537671
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|88504683|gb|CI432189.1|CI432189
EST:     CCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: CCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|29626783|gb|CB631794.1|CB631794
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAG                         TTTCAGTGTATTTGACACATGGTGGCCATGACGAAAGCATTGGCTAGTGAT
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGgttcatattc ... tcagtttcagT----GT--ATTTGACACATGGTGGCCATGACGAAAGCATTGGCTAGTGAT
EST: gi|88491944|gb|CI429216.1|CI429216
EST:     TGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: TGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|88511246|gb|CI438752.1|CI438752
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|89196076|gb|CI395494.1|CI395494
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|88478237|gb|CI415508.1|CI415508
EST:     TCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: TCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|29667676|gb|CB663951.1|CB663951
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAG                         TTTCAGTGTATTTGACACATGGTGGCCATGACGAAAGCATTGGCTAGTGAT
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGgttcatattc ... tcagtttcagT----GT--ATTTGACACATGGTGGCCATGACGAAAGCATTGGCTAGTGAT
EST: gi|88518519|gb|CI446173.1|CI446173
EST:     CATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: CATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt
EST: gi|88507882|gb|CI435388.1|CI435388
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAG                         TGTATTTGACACATGGTGGCCATGACGAAAGCATTGGCTAGTGATGAATGT
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGgttcatattc ... tcagtttcagTGTATTTGACACATGGTGGCCATGACGAAAGCATTGGCTAGTGATGAATGT
EST: gi|88833934|gb|CI077415.1|CI077415
EST:     CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCTAAGTTTCAG                    
genomic: CTAGATGACGTCAGTTAAGCCTTCATTCTGTGCTACCATAGCAACCT-A-----AGgttcatattc ... tcagt