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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTGCTCAAGGCTACTATGGGCCCTCTATCTCGGCTCTGAGTTTAAAACCAAgtactccccttaactacgaatcatggtttcaatatgattatgatttatattctggggtcaactattgcatttaattgtaagatcacattcttttctcttgtcttcctgttag

Basic information

species Oryza sativa
transcript LOC_Os04g52630.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
TTTGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTGCTCAAGGCTACTATGGGCCCTCTATCTCGGCTCTGAGTTTAAAACCAAgtactccccttaactacgaatcatggtttcaatatgattatgatttatattctggggtcaactattgcatttaa---ttgtaagatcacattcttttctcttgtcttcctgttag
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||  | ||||| ||| |||||  ||  ||||||||||||||||  ||| ||||||  ||| || ||  ||  |||   |    | |||| || || ||||| ||    || ||   | | |  |  || |  |             
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactccccttagatac-aatcatcattt-aacattttttagataatttcctttgggtaaattaatgcatatatggtttctactttgagaagcacttatggt-------------

upper sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G031536_T01 (Zea mays), 5'ss of exon 3
TTTGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTGCTCAAGGCTACTATGGGCCCTCTATCTCGGCTCTGAGTTTAAAACCAAgtactccccttaactacgaatcatggtttcaatatgattatgatttatattctggggtcaactattgcatttaattgtaagatcacattcttttctcttgtcttcctgttag
||  ||||||||||||| |||||||| |||||||||||||| ||||||||   || |||||||||||||||  | ||||| ||| | ||| |||  ||||||||||||||||  ||| ||||||  ||| || |   | |  || ||  ||||    |  |  |  || | | | || || |  || | |  || |  |             
TTCCTTGAGATTCATCTTTTCTGGGCCGGCAAGGGCACTTGTTGCATTCCCTTTCGAGGCTACTATGGGCCTGCAATCTCAGCTTTCAGTGTAACGCCAAgtactccccttagatac-aatcatcattt-aacaatctcagcatatagtttctact-ttgagaagcgcttatgactgaaacaatacgtccacttatagtagta---------

upper sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 16
TTTGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTGCTCAAGGCTACTATGGGCCCTCTATCTCGGCTCTGAGTTTAAAACCAAgtactccccttaactacgaatcatggtttcaatatgattatgatttatattctggggtcaactattgcatttaattgtaagatcacattcttttctcttgtcttcctgttag-----------------------------------------------------------------------------------------
 |  | || ||||||||||| |||||||| ||||||||||| ||||| |||  ||||||| | ||||||||  | || || ||| |||||  ||  | ||||| || | ||   ||| |||||||| || |||||  ||  |||        |  | ||||| ||| ||||  ||   |     ||         |  ||    |     ||                                                                                         
ATCCTAGAAATTCATCTCTTTTGGGCTGGAAAGGGCACTTGTTGCATCCCTAATCAAGGCGATTATGGGCCTACAATATCAGCTTTGAGTGCAACTCTAAgtattctcttttgatac-aatcatggctttaatattgttcagataatgtccttacgttcaacaatttcattatatacaatttctaccacgagaagtactgaagactaaaaagactggaattttagaaatgcctaacataaaagccaaatattgtttatattgatgtataatcatgctttctaacaaatgcctctcctacag

upper sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 16
lower sequence: AT1G56145.2 (Arabidopsis thaliana), 5'ss of exon 18
TTTGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTGCTCAAGGCTACTATGGGCCCTCTATCTCGGCTCTGAGTTTAAAACCAAgtactccccttaactacgaat--catggtttcaatatgattatgatttatattctggggtcaactattgcatttaattgtaagatcacattcttttctcttgtcttcctgttag
|   ||||  ||||||| ||||||||||| || || || ||||| |||||||||||||||   |||||||| |   |||| ||| | |||  ||  ||| ||| | |    | |    | |  |||| | |   || || |   || ||| ||||      | |   |    ||   || |                                 
TACCTTGAAGTTCATCTTTTCTGGGCTGGAAAAGGGACCTGCTGTATTCCTGCTCAAGGCACTTATGGGCCATTAGTCTCAGCTATCAGTGCAACTCCAGgta-tacatacagcagaaactttcatgatcttcgta-gagtccaatgtatcttctaa--ctagcggcttttattctctgcag--------------------------------

upper sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 16
lower sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
TTTGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTGCTCAAGGCTACTATGGGCCCTCTATCTCGGCTCTGAGTTTAAAACCAAgtactccccttaactacgaatcatggtttcaatatgat-tatgatttatattctggggtcaactattgcatttaattgtaagatcacattcttttctcttgtcttcctgttag
| | |||| |||||||| ||||||||||| ||||| ||||||||||| |||  | | || || ||||| || || || || || || ||| |     || |||  ||  |||| |   | | || |  |  |||| || || ||| |     |||| |    || ||||    || || |  |    |||  || ||  | | ||    | ||
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgctt-cttttgc---caactgca--actgaattggttgctgatttattttgctcag