1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATCGACAGCCCATCTGCACACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgccttcgttgtttcaaagcttagttcagttctgcattgcttctgtgatggaaatgtttatcaacttactatgatgtcttcgcaactgctttag
species | Oryza sativa |
transcript | LOC_Os04g47120.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CGGTGGGCGGGGTTTTGTTACACGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGGCAEST: gi|86430173|gb|CI082596.1|CI082596
genomic: CGGTGGGCGGGGTTTTGTTACA-GGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|87005717|gb|CI316136.1|CI316136
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88254772|gb|CI353596.1|CI353596
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|86863469|gb|CI345210.1|CI345210
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|89177316|gb|CI250765.1|CI250765
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|58609050|gb|CK037083.1|CK037083
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGG-GGGCGAAGACGCCAEST: gi|88255678|gb|CI354502.1|CI354502
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88506400|gb|CI433906.1|CI433906
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88455844|gb|CI526660.1|CI526660
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: GGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|86860786|gb|CI325017.1|CI325017
genomic: GGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGTCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|86844554|gb|CI338574.1|CI338574
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88829709|gb|CI074579.1|CI074579
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88267559|gb|CI379494.1|CI379494
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88250752|gb|CI348982.1|CI348982
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88218896|gb|CI216894.1|CI216894
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|87026186|gb|CI278310.1|CI278310
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|86429359|gb|CI076040.1|CI076040
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|86878942|gb|CI315384.1|CI315384
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|29670926|gb|CB667201.1|CB667201
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88290282|gb|CI550504.1|CI550504
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: GGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88321078|gb|CI530430.1|CI530430
genomic: GGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: TGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|86434548|gb|CI105781.1|CI105781
genomic: TGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88843985|gb|CI008566.1|CI008566
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|86487750|gb|CI130383.1|CI130383
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGTTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|33681707|gb|CF309946.1|CF309946
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: CGGTGGGCGGGGGTTTTGTCACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTANGAGGGCGAAGACGCCAEST: gi|88457318|gb|CI534316.1|CI534316
genomic: CGGTGGGCGGGG-TTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88971423|gb|CI017737.1|CI017737
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|86426203|gb|CI071300.1|CI071300
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88489955|gb|CI427227.1|CI427227
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88469972|gb|CI407243.1|CI407243
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88489413|gb|CI426685.1|CI426685
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: C-GTGGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATNTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88254212|gb|CI352838.1|CI352838
genomic: CGGT-GGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|22304837|gb|BQ906059.1|BQ906059
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|86490744|gb|CI133377.1|CI133377
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|88959770|gb|CI002380.1|CI002380
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCAEST: gi|86844461|gb|CI337736.1|CI337736
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
EST: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAG CTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
genomic: ACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgcct ... actgctttagCTCGTCATGTCGTTGACCCAAGAGGCGCTGATTAGGAGGGCGAAGACGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGACAGCCCATCTGCACACGGTGGGCGGGGTTTTGTTACAGGGCGAATGTTCAACCGACAAGGAGAGgtatatgccttcgttgtttcaaagcttagttcagttctgcattgcttctgtgatggaaatgtttatcaacttactatgatgtcttcgcaactgctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA