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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattcaagaaaaagatatacttaaggttagttgtctatttattaccccacatctatcttgacgtttgatgaccctgccatgtacag

Basic information

species Oryza sativa
transcript LOC_Os04g11880.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g11880.1 (Oryza sativa), 5'ss of exon 18
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 18
GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattcaagaaaaagatatacttaaggttagttgtctatttattaccccacatct---atcttgacgtttgatgaccctgccatgtacag
|||||||||||| ||||||||||||||||| || || || ||||||||||||||  || |||| ||||| ||||||||||||||| |  |||      |   | | ||    | |   |||||    |  | |    || |   |  ||  | |  ||  | | |||  ||| |||
GTTGCGGGATCGTCTTGTGAAAATTGTGACGGATTACCGGACAGAAACTTCATTGCGAAATGGATGCAACGATATACTTAAGgtttactttctttcgtatactgtgct----gctccatgtct--caaccatcttgaattttggacattttcatccga--aacttgctttgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8527531|gb|AU092346.1|AU092346
EST:     TNTCCGAACCAGAAACTTCATTAAGACATGGNTGCAATGATATACTTAAG                         GCTGATTGCGT-AACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGA
genomic: TAT-CGAA-CAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattc ... ccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGA
EST: gi|55409184|gb|CV721560.1|CV721560
EST:     ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG                         GCTGATTGCGTAAACCTTTTG
genomic: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattc ... ccatgtacagGCTGATTGCGTAAACCTTTTG
EST: gi|218488547|gb|FG955820.1|FG955820
EST:     ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG                         GCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGA
genomic: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattc ... ccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGA
EST: gi|58688189|gb|CK076876.1|CK076876
EST:     ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG                         GCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGA
genomic: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattc ... ccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATTATCACGAGGCTCGGCGTGGA
EST: gi|218492660|gb|FG966164.1|FG966164
EST:     ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAG                         GCTGATTGCGTAAACCTTTTGGTAAAATATT
genomic: ACTATCGAACAGAAACTTCATTAAGACATGGGTGCAATGATATACTTAAGgttaatattc ... ccatgtacagGCTGATTGCGTAAACCTTTTGGTAAAATATT