1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GCCGTTGAATTTGTGATGGAGCAACACGATGATGAGTTATGGGAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATGgtaattgagctgtgtattctgttcaatactcttgacactgatgttccttctgtttattcattgcatttttgtaaccgttgagcag
species | Oryza sativa |
transcript | LOC_Os04g11880.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATG GTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATTEST: gi|58688189|gb|CK076876.1|CK076876
genomic: GAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATGgtaattgagc ... cgttgagcagGTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATT
EST: ATGAGTTATGGGAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATG GTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATTEST: gi|58692342|gb|CK081029.1|CK081029
genomic: ATGAGTTATGGGAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATGgtaattgagc ... cgttgagcagGTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATT
EST: ATGAGTTATGGGAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATG GTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATTEST: gi|218492660|gb|FG966164.1|FG966164
genomic: ATGAGTTATGGGAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATGgtaattgagc ... cgttgagcagGTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATT
EST: ATGAGTTATGGGAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATG GTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATT
genomic: ATGAGTTATGGGAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATGgtaattgagc ... cgttgagcagGTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGTTGAATTTGTGATGGAGCAACACGATGATGAGTTATGGGAGGAATTGATAAGACAGTGCCTCCAAAAACCTGAGATGgtaattgagctgtgtattctgttcaatactcttgacactgatgttccttctgtttattcattgcatttttgtaaccgttgagcag
- - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG