1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
ATGATACATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGgtagatttaattttgcttgcattgacaattgaaccaaagaaaaggaacaaattttgaaccaaaaggaatacaactttctatgcagcagcttgtgatccagtatagtgcctcctcatattgattgcaaaatacaccttttgcctttctcttttag
species | Oryza sativa |
transcript | LOC_Os03g42750.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAG GAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTEST: gi|58665096|gb|CK053782.1|CK053782
genomic: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGgtagatttaa ... tctcttttagGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGT
EST: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAG GAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTEST: gi|29645303|gb|CB650310.1|CB650310
genomic: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGgtagatttaa ... tctcttttagGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGT
EST: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAG GAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTEST: gi|58654154|gb|CK042834.1|CK042834
genomic: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGgtagatttaa ... tctcttttagGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGT
EST: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAG GAAGACTTCTATGCGGTTGTCGATTGGGCAEST: gi|58602109|gb|CK012637.1|CK012637
genomic: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGgtagatttaa ... tctcttttagGAAGACTTCTATGCGGTTGTCGATTGGGCA
EST: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAG GAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTEST: gi|58612470|gb|CK040182.1|CK040182
genomic: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGgtagatttaa ... tctcttttagGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGT
EST: AATCGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAG GAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTEST: gi|58604329|gb|CK014857.1|CK014857
genomic: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGgtagatttaa ... tctcttttagGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGT
EST: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAG GAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGTEST: gi|29627167|gb|CB632178.1|CB632178
genomic: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGgtagatttaa ... tctcttttagGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGT
EST: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAG GAAGACTTCTCCGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGT
genomic: AATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGgtagatttaa ... tctcttttagGAAGACTTCTATGCGGTTGTCGATTGGGCATACAAGATTGATCCCTTGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATACATCTGCTGAATTGGGTACATTGAATGATGCTCTTCAAGAACTACTCGATGGAATCCAGgtagatttaattttgcttgcattgacaattgaaccaaagaaaaggaacaaattttgaaccaaaaggaatacaactttctatgcagcagcttgtgatccagtatagtgcctcctcatattgattgcaaaatacaccttttgcctttctcttttag
- - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA