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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATGCATTAGTTTTTGGGCTGAGGTGCACTACGATTCGGTATATGCAGAAAAAGgtacagtttgtcgttttgatacagtgttcttctaggagtactagtatctctttggcaggttgatgctgtagctcatgtgtgcaagttgtggtgcag

Basic information

species Oryza sativa
transcript LOC_Os03g39230.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g39230.1 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G035150_T03 (Zea mays), 5'ss of exon 10
AGATATGCATTAGTTTTTGGGCTGAGGTGCACTACGATTCGGTATATGCAGAAAAAGgtacagtttgtcgttttgatacagtgttcttctaggagtact-agtatctc-tttggcaggttgatgctgtagctcatgtgtgcaagttgtggtgcag
  |||||| | |||||||||||||||||||||||| | ||  ||||| | |||  ||||||    |||||   |  ||  |||||  | || |  |  | ||| | |  ||| |  |  |  || ||  ||                        
TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatgtcgccatt-tagtgtgttgatgtatgtttgttgagtgtttaatttcgttgtcttctgttgctgcag----------------------

upper sequence: LOC_Os03g39230.1 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G035150_T01 (Zea mays), 5'ss of exon 10
---------------------------------------AGATATGCATTAGTTTTTGGGCTGAGGTGCACTACGATTCGGTATATGCAGAAAAAGgtacagtttgtcgttttgatacagtgttcttctaggagtact-agtatctc-tttggcaggttgatgctgtagctcatgtgtgcaagttgtggtgcag
                                         |||||| | |||||||||||||||||||||||| | ||  ||||| | |||  ||||||    |||||   |  ||  |||||  | || |  |  | ||| | |  ||| |  |  |  || ||  ||                        
AGGTTTTGGCTATCTAAACTCAGAAGTCCTGTTGTGCAGTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCCATATATCCTGAAGGAGgtactagatgtcgccatt-tagtgtgttgatgtatgtttgttgagtgtttaatttcgttgtcttctgttgctgcag----------------------