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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTTGATCGTGGAACTGATAAGAATAAAGAAACTTCAAAGGCGACGAAGCATCTAACTAAGCTTTTCCCAAATAAAGTGACGATCCAGCCACCAAAAgtatgttctattcatactagtaaaaaaggacagttaacttgcagcagtttctctgactttttttttctattttttaaatctggaaaaaatgttacag

Basic information

species Oryza sativa
transcript LOC_Os03g22420.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g22420.2 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G042074_T02 (Zea mays), 5'ss of exon 11
GACTTTGATCGTGGAACTGATAAGAATAAAGAAACTTCAAAGGCGACGAAGCATCTAACTAAGCTTTTCCCAAATAAAGTGACGATCCAGCCACCAAAAgtatgttctat-tcatactagtaaaaaaggacagttaacttgcagcagtttctctgac------------------ttttttt----ttctattttt-taaatctggaaaaaatgttacag
||| |||||     || || ||| ||||||||||||||||||||  |||||||| |||  || |||||||||||||||||||   || || ||||| |||||||||  |  | ||     || |  ||     || || | ||    | | |||||                    | || |    ||| |||||  || |    ||| ||||||| |||
GACATTGATGCGATAAATGGTAATAATAAAGAAACTTCAAAGGCAGCGAAGCATTTAATCAAACTTTTCCCAAATAAAGTGATACTCGAGGCACCACAAgtatgtttgagatgattaatttagactagcttctttgacatccaattttatttctgatatgattaacttagagtagctcttctggcattcaattttaatagactcagaacaaatgttgcag

upper sequence: LOC_Os03g22420.2 (Oryza sativa), 5'ss of exon 16
lower sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 16
-GACTTTGATCGTGGAACTGATAAGAATAAAGAAACTTCAAAGGCGACGAAGCATCTAACTAAGCTTTTCCCAAATAAAGTGACGATCCAGCCACCAAAAgtatgt-----------tctattcatactagtaaaaaaggacagttaacttgcagcagtttctctgactttttttttctattttttaaatctggaaaaaatgttacag
    ||||   |      ||| | |   || ||| |  ||||| | |  ||     |||||||||||||||||||||||||||| || ||    ||| | || |||           | | |||   ||  || || |  | | ||   |   | || || |    |  |   || |   ||      || ||||     |       
TAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTGACTATTCACATGCCACAGgtttgtatgtcaacactttttttccctctcatataataatataattg--tcaaaccaattaccaaaatgtaagttgttggttgaaggtatatggatggtttt------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33675853|gb|CF304092.1|CF304092
EST:     AGCATCTAACTAAGCTTTTCCCAAATAAAGTGACGATCCAGCCACCAAAA                         GATGAAATTGAGCGCTCGAAGTGGAACCAGATGCTAGATCGAGATGTTGAA
genomic: AGCATCTAACTAAGCTTTTCCCAAATAAAGTGACGATCCAGCCACCAAAAgtatgttcta ... aatgttacagGATGAAATTGAGCGCTCGAAGTGGAACCAGATGCTAGATCGAGATGTTGAA