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TCATCCCTTGACAATTCAGGTGTCAAACTATGATCAATTGGCCGCATCTGCTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAGgtatttttactatcccactaaggaacatcgctgacacaactgaaattgaaataaccggccaggaaattctctcttgcag
species | Oryza sativa |
transcript | LOC_Os03g20420.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAG GTTGTCAATTTTGGTAACAAAGCTGTGAATCTTAATATAGCTGTAGCTGGAEST: gi|29680538|gb|CB676813.1|CB676813
genomic: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAGgtatttttac ... tctcttgcagGTTGTCAATTTTGGTAACAAAGCTGTGAATCTTAATATAGCTGTAGCTGGA
EST: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAG GTTGTCAATTTTGGTAACAAAGCTGTGAATCTTAATATAGCTGTAGCTGGAEST: gi|38477359|gb|CF961492.1|CF961492
genomic: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAGgtatttttac ... tctcttgcagGTTGTCAATTTTGGTAACAAAGCTGTGAATCTTAATATAGCTGTAGCTGGA
EST: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAG GTTGTCAATTTTGGTAACAAAGCTGTGAATCTTAEST: gi|29645169|gb|CB650176.1|CB650176
genomic: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAGgtatttttac ... tctcttgcagGTTGTCAATTTTGGTAACAAAGCTGTGAATCTTA
EST: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAG GTTGTCAATTTTGGTAACAAAGCTGTGAATCTTAATATAGCTGTAGCTGGAEST: gi|29676177|gb|CB672452.1|CB672452
genomic: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAGgtatttttac ... tctcttgcagGTTGTCAATTTTGGTAACAAAGCTGTGAATCTTAATATAGCTGTAGCTGGA
EST: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAG GTTGTCAATTTTGGTAACAAAGCTGTGAATCTTAATATAGCTGTAGCTGGAEST: gi|27554516|gb|CA998416.1|CA998416
genomic: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAGgtatttttac ... tctcttgcagGTTGTCAATTTTGGTAACAAAGCTGTGAATCTTAATATAGCTGTAGCTGGA
EST: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAG GTTGTNCA-TTTTGGTAACAAAGCTGTGAATCTTAATATAGCTGTAGCTGG
genomic: CTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAGgtatttttac ... tctcttgcagGTTGT-CAATTTTGGTAACAAAGCTGTGAATCTTAATATAGCTGTAGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCCCTTGACAATTCAGGTGTCAAACTATGATCAATTGGCCGCATCTGCTCTCACTTGGCAGAATTCTAACGATGGAAACACTTACTTGAAAATAAAGgtatttttactatcccactaaggaacatcgctgacacaactgaaattgaaataaccggccaggaaattctctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA