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TGCAAGCAGTGGTGCTGGTACTGTCGAACATTTTTCTGAGGTCTTTGAGAAAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtcccgccttgtactttttattcagcatgctatgcctggagctctacatgataatcctttattccttttcttgcaagttctggaaaactttgacc...
species | Oryza sativa |
transcript | LOC_Os03g15120.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88227851|gb|CI227331.1|CI227331
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|89164031|gb|CI101119.1|CI101119
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88438607|gb|CI543711.1|CI543711
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88265787|gb|CI376689.1|CI376689
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88531682|gb|CI460092.1|CI460092
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATNCTGGCGTGGAGGTCEST: gi|86600373|gb|CI356130.1|CI356130
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88907823|gb|CI091221.1|CI091221
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88515936|gb|CI443590.1|CI443590
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|87010113|gb|CI279210.1|CI279210
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88552745|gb|CI482783.1|CI482783
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|33808918|gb|CF330345.1|CF330345
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88978697|gb|CI385038.1|CI385038
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|86500063|gb|CI142696.1|CI142696
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88260746|gb|CI363039.1|CI363039
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|86432146|gb|CI085757.1|CI085757
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88221798|gb|CI221754.1|CI221754
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|86597766|gb|CI274757.1|CI274757
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|87016640|gb|CI275642.1|CI275642
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTCEST: gi|88849245|gb|CI087767.1|CI087767
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
EST: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAG GTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
genomic: AAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtccc ... tttatcacagGTTCCGATTTCAGCAGTGAAAGAGCATCTGGTAGATGCTGGCGTGGAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAAGCAGTGGTGCTGGTACTGTCGAACATTTTTCTGAGGTCTTTGAGAAAACAAATGCTTCTGCTGCCCTTGCTGCTGGCATTTTCCATCGGAAAGAGgtattgtcccgccttgtactttttattcagcatgctatgcctggagctctacatgataatcctttattccttttcttgcaagttctggaaaactttgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccgcc