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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAAGATCTTAGCAAATGCTGATGGAGTACGGTTGCTGCGCACATTGGAAAATCGTTCATTTGATGCTTCTCGGAGTGCGTCTGAGACTGTAACAAAGgtaagttcttgtgaccatttaaaattacaactaaatatttttgcaagcttgacccaatagatccatcttggtgcag

Basic information

species Oryza sativa
transcript LOC_Os03g14980.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g14980.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G550865_T02 (Zea mays), 5'ss of exon 3
TATCAAGATCTTAGCAAATGCTGATGGAGTACGGTTGCTGCGCACATTGGAAAATCGTTCATTTGATGCTTCTCGGAGTGCGTCTGAGACTGTAACAAAGgtaagttcttgtgaccatttaaaattacaactaaatatttttgcaagcttgacccaatagatccatcttggtgcag
 ||||||||||||||||||||||||||| | ||||||||||||||  ||||||||||||| |||||||||||||| | ||| |||||| ||||||||||||| | | ||||| ||||   |||| | |    ||  || | ||||||| | | | |||  |||| | ||  |||||
CATCAAGATCTTAGCAAATGCTGATGGACTTCGGTTGCTGCGCACGCTGGAAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtta-tgcttgtaaccac--aaaaattctgagaagaatatctgcaagcatcatctaatcaatccttgtttatgcag

upper sequence: LOC_Os03g14980.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G030422_T02 (Zea mays), 5'ss of exon 17
TATCAAGATCTTAGCAAATGCTGATGGAGTACGGTTGCTGCGCACATTGGAAAATCGTTCATTTGATGCTTCTCGGAGTGCGTCTGAGACTGTAACAAAGgtaagttcttgtgaccatttaaaattacaactaaatatttttgcaagcttgacccaatagatccatcttggtgcag
|||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||||| | ||| |||||| ||||||||||||||| | || || ||||   ||||||    ||||  || | ||||||| |||   ||| ||||| | ||  |||||
TATCAAGATCTTAGCAAATGCTGATGGACTTCGGTTGCTGCGCACACTGGAAAATCGTTCTTTTGATGCTTCTCGTAATGCATCTGAGGCTGTAACAAAGgtaattactggtaaccac--aaaatt----ctaagaatatctgcaagcatgatgtaatcgatccttgtttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58659010|gb|CK047690.1|CK047690
EST:     TGAGACTGTAACAAAG                         -CCCTAATGAATCCATTGACTGCTGCTGCTGCTGCGGCGGCGTCAGCTGC-
genomic: TGAGACTGTAACAAAGgtaagttctt ... cttggtgcagCCCCTAATGAATCCATTGACTGCTGCTGCTGCTGCGGCGGCGTCAGCTGCT
EST: gi|29671653|gb|CB667928.1|CB667928
EST:     AAAATCGTTCATTTGATGCTTCTCGGAGTGCGTCTGAGACTGTAACAAAA                         CCCCTAATGAATCCATTGACTGCTGCTGCTGCTGC
genomic: AAAATCGTTCATTTGATGCTTCTCGGAGTGCGTCTGAGACTGTAACAAAGgtaagttctt ... cttggtgcagCCCCTAATGAATCCATTGACTGCTGCTGCTGCTGC
EST: gi|44675806|gb|CR289240.1|CR289240
EST:     AAATCGTTCATTTGATGCTTCTCAGGAGTGCGTCTGAGACTGTAACAAAG                         CCCCTAATTGA-TCCATTTGACTGCTGCT
genomic: AAATCGTTCATTTGATGCTTCTC-GGAGTGCGTCTGAGACTGTAACAAAGgtaagttctt ... cttggtgcagCCCCTAAT-GAATCCATT-GACTGCTGCT