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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCGTTGCTTCTAAAAGACAGTTTTATCGATTCATTCCCCTCAAAGGACCGACCATTTGTAAAGgtatttgtagttgagttacgtttttacgaaattaatagaaatttataagttgttcatgaacccttggatggcaaacctgtagtatacttctagaggcatg...

Basic information

species Oryza sativa
transcript LOC_Os03g05200.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g05200.2 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G107651_T01 (Zea mays), 5'ss of exon 14
GTTTCGTTGCTTCTAAAAGACAGTTTTATCGATTCATTCCCCTCAAAGGACCGACCATTTGTAAAGgtatttgtagttgagttacgtttttacgaaattaatagaaattt---ataagttgttcatgaacccttggatggcaaacctgtagtatacttctagaggcatg
||||| |||||||| ||||||||||| || ||||| ||||||||||| ||  |||||||| ||||||||  | |  |   ||| |       |  | |   |    ||||    ||||     ||   |   ||| |||| |       | |  |   ||    |  | 
GTTTCTTTGCTTCTGAAAGACAGTTTCATTGATTCGTTCCCCTCAAATGATAGACCATTTATAAAGgtacgtatcttattgtttcacaca-gcagattccgtgtttattttctgtaagaaaaccacatatagttg-atggaagtagcagatttcaggcctttctgtct-

upper sequence: LOC_Os03g05200.2 (Oryza sativa), 5'ss of exon 16
lower sequence: AT2G20320.1 (Arabidopsis thaliana), 5'ss of exon 18
GTTTCGTTGCTTCTAAAAGACAGTTTTATCGATTCATTCCCCTCAAAGGACCGACCATTTGTAAAGgtatttgtagttgagttacgtttttacgaaattaatagaaatttataagttgttcatgaacccttggatggcaaacctgtagtatacttctagaggcatg
|||||  | |||||||| |||||||||||||||||||| ||    |  || ||||| ||  | ||||||        | |      |  |  |   | |  | || |||   |      ||  ||  | |   |   | | ||| |  ||| ||       |||  
GTTTCTCTACTTCTAAAGGACAGTTTTATCGATTCATTTCCTGGTAGAGATCGACCCTTCATTAAGgtacaaaatcctaatcccaatcgtggcatcagtttttgatattctcactggaatccagaggcttacaagttccatcctttgttattctgggttttgcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29624630|gb|CB629641.1|CB629641
EST:     AAGACAGTTTTATCGATTCATTCCCCTCAAAGGACCGACCATTTGTAAAG                         CTTTTTGTGGAGACGCAGATGTTCTCTGTTCTATCAGATTCTCGACTTTCC
genomic: AAGACAGTTTTATCGATTCATTCCCCTCAAAGGACCGACCATTTGTAAAGgtatttgtag ... gtgtttgcagCTTTTTGTGGAGACGCAGATGTTCTCTGTTCTATCAGATTCTCGACTTTCC
EST: gi|29614852|gb|CB619865.1|CB619865
EST:     AAGACAGTTTTATCGATTCATTCCCCTCAAAGGACCGACCATTTGTAAAG                         CTTTTTGTGGAGACGCAGATGTTCTCTGTTCTATCAGATTCTCGACTTTCC
genomic: AAGACAGTTTTATCGATTCATTCCCCTCAAAGGACCGACCATTTGTAAAGgtatttgtag ... gtgtttgcagCTTTTTGTGGAGACGCAGATGTTCTCTGTTCTATCAGATTCTCGACTTTCC