Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttctggtgcctttgacagcatctcttgacatggatgctttatttgtgcaataagcgtatgtaaagggcatagtttgcactaacttatgtggaataagacgacgtacgctaactctggaaatgaaaatgcag

Basic information

species Oryza sativa
transcript LOC_Os02g58340.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58340.1 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G133919_T01 (Zea mays), 5'ss of exon 16
GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttctggtgcctttgacagcatctcttgacatggatgctttatttgtgcaataagcgtatgtaaagggcatagtttgcactaacttatgtggaataagacgacgtacgctaactctggaaatgaaaatgcag
||||| |||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| || ||||||      |||   |||| |    ||||||||    || |||||| |||  |||  |||  | | ||||    || |     | |    | ||  |                                        
GCAATCGAGGAAACTGGCAGACGATTCAGAGACACTGTTCTTGCGCTTGGAGGTGGAAAGTCTCCGCTTGAGgtaa-----tggcttctttca----atctcttggg--ggctgctttgttt-cgcagcaagtctgt-taaaaaaaatgga----attgtgctctgcag----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87010666|gb|CI312358.1|CI312358
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|86489837|gb|CI132470.1|CI132470
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|29685086|gb|CB681361.1|CB681361
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88548065|gb|CI476978.1|CI476978
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88966578|gb|CI353129.1|CI353129
EST:     ATTCAGAGAAACAAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: ATTCAGAGAAAC-AGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|27577469|gb|CB000164.1|CB000164
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|86525997|gb|CI166203.1|CI166203
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|86889224|gb|CI315835.1|CI315835
EST:     ATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCAGCTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCCGAAGCTCTGCTCAG
genomic: ATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCA-CTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAG
EST: gi|86437668|gb|CI119588.1|CI119588
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGATCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88415868|gb|CI536022.1|CI536022
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88322531|gb|CI542859.1|CI542859
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|29628315|gb|CB633326.1|CB633326
EST:     GATTCAGAGAAACGGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGATGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|86596740|gb|CI286653.1|CI286653
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|89183340|gb|CI045905.1|CI045905
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|29629259|gb|CB634270.1|CB634270
EST:     GATTCAGAGAAACGGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|58031074|gb|CX728617.1|CX728617
EST:     CTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: CTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|3107195|gb|D42935.1|D42935
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|86497160|gb|CI139793.1|CI139793
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88223547|gb|CI223396.1|CI223396
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|87005786|gb|CI316205.1|CI316205
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|86906176|gb|CI320107.1|CI320107
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88375968|gb|CI530472.1|CI530472
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|86889992|gb|CI319981.1|CI319981
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88907988|gb|CI090584.1|CI090584
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88220405|gb|CI219965.1|CI219965
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88453142|gb|CI539325.1|CI539325
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|163920194|gb|EG714428.1|EG714428
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|87040458|gb|CI195080.1|CI195080
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|87036488|gb|CI191110.1|CI191110
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88996615|gb|CI389281.1|CI389281
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88446136|gb|CI552642.1|CI552642
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|58613168|gb|CK040880.1|CK040880
EST:     GATTCAGAGAAACGGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|87021331|gb|CI295390.1|CI295390
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88254054|gb|CI352680.1|CI352680
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|87041614|gb|CI196236.1|CI196236
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88843387|gb|CI372287.1|CI372287
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|86883842|gb|CI328790.1|CI328790
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCCCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|86862960|gb|CI331761.1|CI331761
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88971200|gb|CI387167.1|CI387167
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCCCGGACGGGAGCCATCACCAGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|86862751|gb|CI331642.1|CI331642
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCCCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88663126|gb|CI476732.1|CI476732
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTTTNCTGGCT
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGC--T-CT-GCT
EST: gi|88442096|gb|CI560337.1|CI560337
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88449195|gb|CI560656.1|CI560656
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|22306852|gb|BQ908074.1|BQ908074
EST:     GATTCAGAGAAACGGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCCGGAAGCTCTGCTCAG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACC-GGAAGCTCTGCTCAG
EST: gi|22305323|gb|BQ906545.1|BQ906545
EST:     GATTCAGAGAAACGGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|66912656|gb|CX099504.1|CX099504
EST:     GATTCAGAGAAACGGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCANG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|38471500|gb|CF955631.1|CF955631
EST:     GATTCAGAGAAACGGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCT
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCT
EST: gi|88271562|gb|CI387615.1|CI387615
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACCGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88220356|gb|CI219916.1|CI219916
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|18387237|gb|BM420435.1|BM420435
EST:     GATTCAGAGAAACGGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|89174907|gb|CI111105.1|CI111105
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|88843719|gb|CI010977.1|CI010977
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|58610594|gb|CK038306.1|CK038306
EST:     GATTCAGAGAAACGGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|313084093|gb|HO213876.1|HO213876
EST:     GATTCAGAGAAACGGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
EST: gi|9864982|gb|AU100732.1|AU100732
EST:     GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAG                         GTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG
genomic: GATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 46 (upstream exon), 51 (downstream exon)
Score: 3

GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttct ... gaaaatgcagGTGTTTGTGTCTTTCCGCGGACGGGAGCCATCACCGGAAGCTCTGCTCAGGCACAACGGCTTGCTACCTGTTGCTGCATTGTGATAACTCATGCTCGATT




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAATTGAGGAAACTGGCAGACGATTCAGAGAAACAGTCCTTGCGCTTGGAGGTGGAAAATCTCCACTCGAGgtaggcttctggtgcctttgacagcatctcttgacatggatgctttatttgtgcaataagcgtatgtaaagggcatagtttgcactaacttatgtggaataagacgacgtacgctaactctggaaatgaaaatgcag

- - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA