1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGCCTGAAAACTGGAATGTATTATCTAAGAACACGCGCTGCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAGgtgattcgacaactatatacagattttgcatcatattttacacatgattcttaccctgagaaacgctgcatgtgcag
species | Oryza sativa |
transcript | LOC_Os02g56100.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GCGCTGCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAG GATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAGEST: gi|88508770|gb|CI436276.1|CI436276
genomic: GCGCTGCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAGgtgattcgac ... gcatgtgcagGATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAG
EST: GCGCTGCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAG GATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAGEST: gi|88480030|gb|CI417301.1|CI417301
genomic: GCGCTGCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAGgtgattcgac ... gcatgtgcagGATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAG
EST: GCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAG GATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAGEST: gi|88505269|gb|CI432775.1|CI432775
genomic: GCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAGgtgattcgac ... gcatgtgcagGATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAG
EST: GACACTACTCTCCTCAAG GATAACCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAGEST: gi|88470170|gb|CI407441.1|CI407441
genomic: GACACTACTCTCCTCAAGgtgattcgac ... gcatgtgcagGATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAG
EST: GCGCTGCGGCCGATGCAATCAAATTCACANTGGACACTACTCTCCTCAAG GATAACCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAGEST: gi|88474972|gb|CI412243.1|CI412243
genomic: GCGCTGCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAGgtgattcgac ... gcatgtgcagGATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAG
EST: GCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAG GATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAGEST: gi|88520109|gb|CI447763.1|CI447763
genomic: GCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAGgtgattcgac ... gcatgtgcagGATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAG
EST: CTGCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAG GATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAGEST: gi|88516157|gb|CI443811.1|CI443811
genomic: CTGCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAGgtgattcgac ... gcatgtgcagGATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAG
EST: TTCACAGTGGACACTACTCTCCTCAAG GATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAGEST: gi|88479118|gb|CI416389.1|CI416389
genomic: TTCACAGTGGACACTACTCTCCTCAAGgtgattcgac ... gcatgtgcagGATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAG
EST: GACACTACTCTCCTCAAG GATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTGTAAAATGGCAGAG
genomic: GACACTACTCTCCTCAAGgtgattcgac ... gcatgtgcagGATAAGCAGCATAATGCAGAGGAAGAGGATGTCCAGTCTAAAATGGCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCTGAAAACTGGAATGTATTATCTAAGAACACGCGCTGCTGCCGATGCAATCAAATTCACAGTGGACACTACTCTCCTCAAGgtgattcgacaactatatacagattttgcatcatattttacacatgattcttaccctgagaaacgctgcatgtgcag
- - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC